Browse Element(s) Details


Os.55381.1.S1_at

Description gb:AK107981.1
DB_XREF= gi:32993190
TID=Os.55381.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55381 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-135-E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-E06, full insert sequence.
FL= gb:AK107981.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2188011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21850Os.7258.1.S1_at11/113+12471766..12478845expressed protein
LOC_Os03g21860OsAffx.25185.1.S1_at11/113+12483360..12485699hypothetical protein
LOC_Os03g21870Os.16113.1.S1_s_at11/113+12488364..12489497uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os03g21870OsAffx.3291.1.S1_at11/113+12488364..12489497uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os03g21880Os.55381.1.S1_at11/113+12493855..12494396expressed protein
LOC_Os03g21890OsAffx.3292.1.S1_s_at11/113+12503309..12507647Potassium transporter 2, putative, expressed
LOC_Os03g21890Os.51936.1.S1_at1/113+12503309..12507647Potassium transporter 2, putative, expressed
LOC_Os03g21900Os.10800.1.S1_at11/113+12507923..12511517Uroporphyrinogen decarboxylase, chloroplast precursor, putative, expressed
LOC_Os03g21914Os.11878.1.S1_at11/113+12512486..12519049expressed protein
LOC_Os03g21914Os.8844.1.S1_at1/113+12512486..12519049expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55381.1.S1_at--621--3071Chr03:12493887..12493911 (25 bp)
AATCAACCGGGATCGCAATGGCGTC
LOC_Os03g21880
Os.55381.1.S1_at--1036--5711Chr03:12494021..12494045 (25 bp)
GACTGCTTCTGCGACTGCATGAAGA
LOC_Os03g21880
Os.55381.1.S1_at--1136--3491Chr03:12494038..12494062 (25 bp)
CATGAAGAACCAGTGCATGACGCTG
LOC_Os03g21880
Os.55381.1.S1_at--124--1091Chr03:12494106..12494130 (25 bp)
AGGGCTGCACGCAGATCGGCAAGCC
LOC_Os03g21880
Os.55381.1.S1_at--34--5611Chr03:12494144..12494168 (25 bp)
GACAAGGACTTCTGCGGCTTCTGAT
LOC_Os03g21880
Os.55381.1.S1_at--375--9931Chr03:12494304..12494328 (25 bp)
TACGAGATCTGAGGGTTTAAACCAC
LOC_Os03g21880
Os.55381.1.S1_at--547--10451Chr03:12494320..12494344 (25 bp)
TTAAACCACACACCCTTCGTTGTAT
LOC_Os03g21880
Os.55381.1.S1_at--371--3311Chr03:12494326..12494350 (25 bp)
CACACACCCTTCGTTGTATTATCAA
LOC_Os03g21880
Os.55381.1.S1_at--12--6891Chr03:12494341..12494365 (25 bp)
GTATTATCAAGTACATCTCTATGCG
LOC_Os03g21880
Os.55381.1.S1_at--919--7011Chr03:12494351..12494375 (25 bp)
GTACATCTCTATGCGAATCATTCCT
LOC_Os03g21880
Os.55381.1.S1_at--176--5231Chr03:12494365..12494389 (25 bp)
GAATCATTCCTTATTGGGCCGTTTT
LOC_Os03g21880
Target Sequence 
AATCAACCGGGATCGCAATGGCGTCGAGGAGAGCCGCGGCGGCGGCGCTGCTGCTGGTCGCGGCGGTGGTGGCGGCAGCG
GCGGTGGGCGCTGGCGCGGAGGGGGAGGAGACGACCGGCGACGCCGGCGAGCTGGACTGCTTCTGCGACTGCATGAAGAA
CCAGTGCATGACGCTGGGCGCGGCGCCCAACAAGTTCGACTGCGCCGACGCCTGCACCCAGGGCTGCACGCAGATCGGCA
AGCCGGGCCAGCCCAGCGACAAGGACTTCTGCGGCTTCTGATCCGACCGATCGAGCCCCGCCTCCCAGCCCCAGCCCACG
GTGCCGAGAAGGCCGGACGGTCTCGGTGGTCCGGCCCATCTGCCGCATCAGTTTTCTGTTCTTCTGTTTTTTTTTTTTGA
ACATGTTAAGAATTGTATACGAGATCTGAGGGTTTAAACCACACACCCTTCGTTGTATTATCAAGTACATCTCTATGCGA
ATCATTCCTTATTGGGCCGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55381.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis