Browse Element(s) Details


Os.7258.1.S1_at

Description gb:AK120611.1
DB_XREF= gi:37990234
TID=Os.7258.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.7258 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-200-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013151J09, full insert sequence.
FL= gb:AK120611.1 gb:AK105633.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2185011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21810Os.24536.1.S1_at11/113+12437275..12447855Insulinase containing protein, expressed
LOC_Os03g21810OsAffx.18721.1.S1_at1/113+12437275..12447855Insulinase containing protein, expressed
LOC_Os03g21820Os.2367.1.S1_at11/113+12448139..12449435Alpha-expansin 10 precursor, putative, expressed
LOC_Os03g21830Os.11463.1.S1_at11/113+12456850..12458968expressed protein
LOC_Os03g21840Os.48943.1.S1_at8/113+12459687..12461931reticulon family protein, putative, expressed
LOC_Os03g21850Os.7258.1.S1_at11/113+12471766..12478845expressed protein
LOC_Os03g21860OsAffx.25185.1.S1_at11/113+12483360..12485699hypothetical protein
LOC_Os03g21870Os.16113.1.S1_s_at11/113+12488364..12489497uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os03g21870OsAffx.3291.1.S1_at11/113+12488364..12489497uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os03g21880Os.55381.1.S1_at11/113+12493855..12494396expressed protein
LOC_Os03g21890OsAffx.3292.1.S1_s_at11/113+12503309..12507647Potassium transporter 2, putative, expressed
LOC_Os03g21890Os.51936.1.S1_at1/113+12503309..12507647Potassium transporter 2, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016779molecular_functionnucleotidyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7258.1.S1_at--1133--10451Chr03:12477779..12477803 (25 bp)
TTACAGCATCTACTTGTCAGTCCTC
LOC_Os03g21850
Os.7258.1.S1_at--9--1131Chr03:12477797..12477821 (25 bp)
AGTCCTCATTCCCTGTGACAAAAGG
LOC_Os03g21850
Os.7258.1.S1_at--31--7971Chr03:12477820..12477844 (25 bp)
GGATCTACTCAATTCAACGACTTGG
LOC_Os03g21850
Os.7258.1.S1_at--858--4091Chr03:12477837..12477861 (25 bp)
CGACTTGGAGATGCCTTCACTAGAA
LOC_Os03g21850
Os.7258.1.S1_at--353--1171Chr03:12477946..12477970 (25 bp)
AGTAAGACATGTGCCGATGCTGCTG
LOC_Os03g21850
Os.7258.1.S1_at--1049--2711Chr03:12478485..12478505 (21 bp)
AAGCAGGTCACCAGGATTCTACAAA
LOC_Os03g21850
Os.7258.1.S1_at--202--8051Chr03:12478509..12478533 (25 bp)
GGAGATGAAGATCACTTCCCACCTC
LOC_Os03g21850
Os.7258.1.S1_at--1088--5711Chr03:12478544..12478568 (25 bp)
GACTCGCTGAGACTTTCGGTACATA
LOC_Os03g21850
Os.7258.1.S1_at--657--1551Chr03:12478634..12478658 (25 bp)
AGCTTTTTTCATAACCTCAGGAGAG
LOC_Os03g21850
Os.7258.1.S1_at--1133--9831Chr03:12478700..12478724 (25 bp)
TAAAGTTCTGTCGATCTCTTGTCCT
LOC_Os03g21850
Os.7258.1.S1_at--526--8711Chr03:12478719..12478743 (25 bp)
TGTCCTCCTCAATTGTCTATAGTTA
LOC_Os03g21850
Target Sequence 
TTACAGCATCTACTTGTCAGTCCTCATTCCCTGTGACAAAAGGATCTACTCAATTCAACGACTTGGAGATGCCTTCACTA
GAAAATATTGAGTTTGGAACTTTGGGGTCTTTTTCATTGACACTTGTGTCACCAAAATCGAATAAGAATCCCAACACACA
CTCAACCAGTAAGACATGTGCCGATGCTGCTGCATTGGCATTGCAAAGCCATCCAACACAAAGCAGGTCACCAGGATTCT
ACAAAGTTGGAGATGAAGATCACTTCCCACCTCTCCGTGCTGGGACTCGCTGAGACTTTCGGTACATACACAGATGATAC
AGTTGATCATAGGTTTAGAGAACTAAANGGTAAAGAGAAGAGCTAACAGGTTGAGCTTTTTTCATAACCTCAGGAGAGCG
CAAATGCGAGGATTCTAATAGCATATATATTCGTCCATGTAAAGTTCTGTCGATCTCTTGTCCTCCTCAATTGTCTATAG
TTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7258.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis