Browse Element(s) Details


Os.2367.1.S1_at

Description gb:AF247163.1
DB_XREF= gi:7407660
TID=Os.2367.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.2367 (NCBI UniGene Cluster)
DEF=Oryza sativa alpha-expansin OsEXPA6 mRNA, complete cds.
PROD=alpha-expansin OsEXPA6
FL= gb:AK107698.1 gb:AF247163.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2182011/11Alpha-expansin 10 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21780Os.53789.1.S1_at11/113+12423756..12426046expressed protein
LOC_Os03g21780OsAffx.26997.1.S1_x_at1/113+12423756..12426046expressed protein
LOC_Os03g21790Os.13756.1.S1_s_at11/113+12426071..12428431Cupin family protein, expressed
LOC_Os03g21800Os.26538.1.S1_at11/113+12430913..12435162Transcription factor RF2b, putative, expressed
LOC_Os03g21800OsAffx.14261.4.S1_x_at10/113+12430913..12435162Transcription factor RF2b, putative, expressed
LOC_Os03g21810Os.24536.1.S1_at11/113+12437275..12447855Insulinase containing protein, expressed
LOC_Os03g21810OsAffx.18721.1.S1_at1/113+12437275..12447855Insulinase containing protein, expressed
LOC_Os03g21820Os.2367.1.S1_at11/113+12448139..12449435Alpha-expansin 10 precursor, putative, expressed
LOC_Os03g21830Os.11463.1.S1_at11/113+12456850..12458968expressed protein
LOC_Os03g21840Os.48943.1.S1_at8/113+12459687..12461931reticulon family protein, putative, expressed
LOC_Os03g21850Os.7258.1.S1_at11/113+12471766..12478845expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0009828biological_processcell wall loosening (sensu Magnoliophyta)
GO:0009831biological_processcell wall modification during multidimensional cell growth (sensu Magnoliophyta)
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0005199molecular_functionstructural constituent of cell wall
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2367.1.S1_at--235--6131Chr03:12448519..12448543 (25 bp)
GAGGGCAGGCAGTTCTAGATTAGTT
LOC_Os03g21820
Os.2367.1.S1_at--378--6051Chr03:12448450..12448474 (25 bp)
GAGTTTAATTGCACACCCAATCGGT
LOC_Os03g21820
Os.2367.1.S1_at--786--4171Chr03:12448435..12448459 (25 bp)
CCCAATCGGTGTTTAGTGAGGTCTA
LOC_Os03g21820
Os.2367.1.S1_at--155--7911Chr03:12448391..12448415 (25 bp)
GGTTGCTGTGGCTCCTGCAAGAGAA
LOC_Os03g21820
Os.2367.1.S1_at--386--1471Chr03:12448370..12448394 (25 bp)
AGAAGGCAAGGCATTTCGCGCCCGC
LOC_Os03g21820
Os.2367.1.S1_at--905--9631Chr03:12448342..12448366 (25 bp)
TCAGAGGCCGGATGGTTTGCAGTTT
LOC_Os03g21820
Os.2367.1.S1_at--624--4771Chr03:12448317..12448341 (25 bp)
GCTGCTCTGCTCTTAGTTCAGATTT
LOC_Os03g21820
Os.2367.1.S1_at--555--1631Chr03:12448224..12448248 (25 bp)
AGCGGTGATCGGTGAGCCAGCCTCT
LOC_Os03g21820
Os.2367.1.S1_at--709--1331Chr03:12448192..12448216 (25 bp)
AGAGTGAGCTGTCTGTACAAATGCA
LOC_Os03g21820
Os.2367.1.S1_at--690--2191Chr03:12448176..12448200 (25 bp)
ACAAATGCAGTTGCTTGTTTGCTAC
LOC_Os03g21820
Os.2367.1.S1_at--436--10671Chr03:12448162..12448186 (25 bp)
TTGTTTGCTACTCACTCCATTTAAA
LOC_Os03g21820
Target Sequence 
GAGGGCAGGCAGTTCTAGATTAGTTTAGCCAAGAGGATTATTATCTCTTAATTCTTACTAGTATCTTTTGAGTTTAATTG
CACACCCAATCGGTGTTTAGTGAGGTCTAGTCGTCTAGTAGATGCTGAGGTTGCTGTGGCTCCTGCAAGAGAAGGCAAGG
CATTTCGCGCCCGCGTGTCAGAGGCCGGATGGTTTGCAGTTTGCTGCTCTGCTCTTAGTTCAGATTTGTACAGGGCATGT
GGCATGAGTAAATGAGTTGATTAGTTAGGTCCAGAGAGTGGCTGGCTATAGTGCGAGCGGTGATCGGTGAGCCAGCCTCT
CTGAAAAAGAGTGAGCTGTCTGTACAAATGCAGTTGCTTGTTTGCTACTCACTCCATTTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2367.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis