Browse Element(s) Details


Os.24536.1.S1_at

Description gb:AK068503.1
DB_XREF= gi:32978521
TID=Os.24536.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24536 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013153C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013153C08, full insert sequence.
FL= gb:AK068503.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2181011/11Insulinase containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21750OsAffx.12979.1.S1_at11/113+12412084..12412909hypothetical protein
LOC_Os03g21759NANA3+12415573..12416581hypothetical protein
LOC_Os03g21770OsAffx.3290.1.S1_at11/113+12419496..12421543Protein kinase domain containing protein
LOC_Os03g21780Os.53789.1.S1_at11/113+12423756..12426046expressed protein
LOC_Os03g21780OsAffx.26997.1.S1_x_at1/113+12423756..12426046expressed protein
LOC_Os03g21790Os.13756.1.S1_s_at11/113+12426071..12428431Cupin family protein, expressed
LOC_Os03g21800Os.26538.1.S1_at11/113+12430913..12435162Transcription factor RF2b, putative, expressed
LOC_Os03g21800OsAffx.14261.4.S1_x_at10/113+12430913..12435162Transcription factor RF2b, putative, expressed
LOC_Os03g21810Os.24536.1.S1_at11/113+12437275..12447855Insulinase containing protein, expressed
LOC_Os03g21810OsAffx.18721.1.S1_at1/113+12437275..12447855Insulinase containing protein, expressed
LOC_Os03g21820Os.2367.1.S1_at11/113+12448139..12449435Alpha-expansin 10 precursor, putative, expressed
LOC_Os03g21830Os.11463.1.S1_at11/113+12456850..12458968expressed protein
LOC_Os03g21840Os.48943.1.S1_at8/113+12459687..12461931reticulon family protein, putative, expressed
LOC_Os03g21850Os.7258.1.S1_at11/113+12471766..12478845expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004222molecular_functionmetalloendopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24536.1.S1_at--291--10011Chr03:12447266..12447290 (25 bp)
TAGCAATCCATGTGTATGGCTGCAA
LOC_Os03g21810
Os.24536.1.S1_at--160--10111Chr03:12447280..12447304 (25 bp)
TATGGCTGCAACTCAGACATTGCTG
LOC_Os03g21810
Os.24536.1.S1_at--253--1391Chr03:12447294..12447318 (25 bp)
AGACATTGCTGAGGCTGCCAAGCTA
LOC_Os03g21810
Os.24536.1.S1_at--637--3131Chr03:12447374..12447398 (25 bp)
AATTTTATTCGAGCCTCTGCTGAGG
LOC_Os03g21810
Os.24536.1.S1_at--454--8871Chr03:12447456..12447480 (25 bp)
TGATGGCTAGCAAACCCATCGGTTT
LOC_Os03g21810
Os.24536.1.S1_at--169--6371Chr03:12447575..12447599 (25 bp)
GATCCAGCGATCAGCACAGTTTCAT
LOC_Os03g21810
Os.24536.1.S1_at--388--6831Chr03:12447593..12447617 (25 bp)
GTTTCATGCAGCTTGTAAATTGACG
LOC_Os03g21810
Os.24536.1.S1_at--14--5791Chr03:12447614..12447638 (25 bp)
GACGAGCTTCCATTCAAAGCTGTTG
LOC_Os03g21810
Os.24536.1.S1_at--664--3651Chr03:12447706..12447730 (25 bp)
CTTTTCTTTGCCAGTAAGGTGCCTA
LOC_Os03g21810
Os.24536.1.S1_at--530--7051Chr03:12447719..12447743 (25 bp)
GTAAGGTGCCTATAGTGTTTTGGTA
LOC_Os03g21810
Os.24536.1.S1_at--601--7851Chr03:12447740..12447764 (25 bp)
GGTAGGTGCTATACGATGGATCTCA
LOC_Os03g21810
Target Sequence 
TAGCAATCCATGTGTATGGCTGCAACTCAGACATTGCTGAGGCTGCCAAGCTAAAAGAGCAGTCATGGATTACAATTGAT
GATGTCAAATCCTTGAAAAAATCATCTCAATTTTATTCGAGCCTCTGCTGAGGGAGGAAATTATTGATTTGGTATAATCT
TACAAGAAAGAAACATCATCTCCAAGGCTNTGATGGCTAGCAAACCCATCGGTTTGGTGACCGGAATTTNTGAGGCAGCC
AAGCTGCAGCAGNCACAGAGTGTAGTTGATGACNTCCAATCCTTGAAAGGNGTNTTNGCCTCTGCCGAAGATCCAGCGAT
CAGCACAGTTTCATGCAGCTTGTAAATTGACGAGCTTCCATTCAAAGCTGTTGATAAANAGAGNATTTTTTTTGCTGGTA
AGGTGTACTAATAGTGTTTTGTGCTGTTGATAAANAGAACCTTTTCTTTGCCAGTAAGGTGCCTATAGTGTTTTGGTAGG
TGCTATACGATGGATCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24536.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis