Browse Element(s) Details


Os.53789.1.S1_at

Description gb:AK100067.1
DB_XREF= gi:32985276
TID=Os.53789.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53789 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013162P09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013162P09, full insert sequence.
FL= gb:AK100067.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2178011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21740Os.27048.1.S1_at11/113+12401416..12410317Valyl-tRNA synthetase, putative
LOC_Os03g21750OsAffx.12979.1.S1_at11/113+12412084..12412909hypothetical protein
LOC_Os03g21759NANA3+12415573..12416581hypothetical protein
LOC_Os03g21770OsAffx.3290.1.S1_at11/113+12419496..12421543Protein kinase domain containing protein
LOC_Os03g21780Os.53789.1.S1_at11/113+12423756..12426046expressed protein
LOC_Os03g21780OsAffx.26997.1.S1_x_at1/113+12423756..12426046expressed protein
LOC_Os03g21790Os.13756.1.S1_s_at11/113+12426071..12428431Cupin family protein, expressed
LOC_Os03g21800Os.26538.1.S1_at11/113+12430913..12435162Transcription factor RF2b, putative, expressed
LOC_Os03g21800OsAffx.14261.4.S1_x_at10/113+12430913..12435162Transcription factor RF2b, putative, expressed
LOC_Os03g21810Os.24536.1.S1_at11/113+12437275..12447855Insulinase containing protein, expressed
LOC_Os03g21810OsAffx.18721.1.S1_at1/113+12437275..12447855Insulinase containing protein, expressed
LOC_Os03g21820Os.2367.1.S1_at11/113+12448139..12449435Alpha-expansin 10 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53789.1.S1_at--463--7351Chr03:12425505..12425529 (25 bp)
GTGCAACTGAGCGTTCCGCAGTGAA
LOC_Os03g21780
Os.53789.1.S1_at--28--5711Chr03:12425565..12425589 (25 bp)
GACTCTATTGTTGGAAGCTCCGGAA
LOC_Os03g21780
Os.53789.1.S1_at--527--8211Chr03:12425586..12425610 (25 bp)
GGAATCTGCACCGATCAAAGGCGTG
LOC_Os03g21780
Os.53789.1.S1_at--718--6851Chr03:12425616..12425640 (25 bp)
GTTTGCATGCGAATACACGACCAGT
LOC_Os03g21780
Os.53789.1.S1_at--465--4391Chr03:12425683..12425707 (25 bp)
CCAATTTCTGCATAATCGCTTCGAC
LOC_Os03g21780
Os.53789.1.S1_at--682--4911Chr03:12425700..12425724 (25 bp)
GCTTCGACATGATCGGCTCAACCGG
LOC_Os03g21780
Os.53789.1.S1_at--723--5111Chr03:12425760..12425784 (25 bp)
GCACTTTGGCCCTGGTAGCAACGAA
LOC_Os03g21780
Os.53789.1.S1_at--1038--8231Chr03:12425804..12425828 (25 bp)
GGCAAACTTTGTTCGGTCATTCTCC
LOC_Os03g21780
Os.53789.1.S1_at--773--9491Chr03:12425824..12425848 (25 bp)
TCTCCGGTGAGGCTATAACTTGCTT
LOC_Os03g21780
Os.53789.1.S1_at--1036--10711Chr03:12425843..12425867 (25 bp)
TTGCTTCAGTTGCTTGTTGTGACCT
LOC_Os03g21780
Os.53789.1.S1_at--698--6571Chr03:12425913..12425937 (25 bp)
GATTCTTCACGCTGATTTTTTCGCA
LOC_Os03g21780
Target Sequence 
GTGCAACTGAGCGTTCCGCAGTGAAAAATTTTGCTGCAAAATTCACACATTTTTTGGGGGGACTCTATTGTTGGAAGCTC
CGGAATCTGCACCGATCAAAGGCGTGCCATTGTTTGCATGCGAATACACGACCAGTTTTGGATTTTCGTTGACAATTCGG
GAGGGGAGATGGCGAAAACCAATTTCTGCATAATCGCTTCGACATGATCGGCTCAACCGGCCGGACCATCACGCTACATC
AGCACCAGTGCACCAGCACTTTGGCCCTGGTAGCAACGAACGCCACCACCCTTTCCGGAGGCAAACTTTGTTCGGTCATT
CTCCGGTGAGGCTATAACTTGCTTCAGTTGCTTGTTGTGACCTGTAAGGCTGTATAAGTAGAACATAATTGGGATTGGAG
CGGATTCTGATTCTTCACGCTGATTTTTTCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53789.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis