Browse Element(s) Details


OsAffx.3290.1.S1_at

Description tigr:9631.m02177
TID=OsAffx.3290.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2177011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21740Os.27048.1.S1_at11/113+12401416..12410317Valyl-tRNA synthetase, putative
LOC_Os03g21750OsAffx.12979.1.S1_at11/113+12412084..12412909hypothetical protein
LOC_Os03g21759NANA3+12415573..12416581hypothetical protein
LOC_Os03g21770OsAffx.3290.1.S1_at11/113+12419496..12421543Protein kinase domain containing protein
LOC_Os03g21780Os.53789.1.S1_at11/113+12423756..12426046expressed protein
LOC_Os03g21780OsAffx.26997.1.S1_x_at1/113+12423756..12426046expressed protein
LOC_Os03g21790Os.13756.1.S1_s_at11/113+12426071..12428431Cupin family protein, expressed
LOC_Os03g21800Os.26538.1.S1_at11/113+12430913..12435162Transcription factor RF2b, putative, expressed
LOC_Os03g21800OsAffx.14261.4.S1_x_at10/113+12430913..12435162Transcription factor RF2b, putative, expressed
LOC_Os03g21810Os.24536.1.S1_at11/113+12437275..12447855Insulinase containing protein, expressed
LOC_Os03g21810OsAffx.18721.1.S1_at1/113+12437275..12447855Insulinase containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0009409biological_processresponse to cold
GO:0009651biological_processresponse to salt stress
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3290.1.S1_at--746--3031Chr03:12420419..12420443 (25 bp)
AATCCATGCTCAGAGGTTGAAGCGA
LOC_Os03g21770
OsAffx.3290.1.S1_at--760--3431Chr03:12420476..12420500 (25 bp)
CAGATGTATTGTGCTTGGTCAGAGA
LOC_Os03g21770
OsAffx.3290.1.S1_at--524--5271Chr03:12420499..12420523 (25 bp)
GAATGCGGTGTCAGGTCTTGGTTAT
LOC_Os03g21770
OsAffx.3290.1.S1_at--727--3571Chr03:12420790..12420814 (25 bp)
CATAGGGACTTGAAGCCTCTCAATA
LOC_Os03g21770
OsAffx.3290.1.S1_at--162--5431Chr03:12420801..12420825 (25 bp)
GAAGCCTCTCAATATTCTCATAGAC
LOC_Os03g21770
OsAffx.3290.1.S1_at--892--10191Chr03:12420841..12420862 (22 bp)
TATATCACTGACTTTGGCATCTCAA
LOC_Os03g21770
OsAffx.3290.1.S1_at--883--2291Chr03:12420958..12420982 (25 bp)
AAATGTGAGGTATCCAGGTGGCCCT
LOC_Os03g21770
OsAffx.3290.1.S1_at--916--1051Chr03:12420973..12420997 (25 bp)
AGGTGGCCCTCAGTATGGAACCCAA
LOC_Os03g21770
OsAffx.3290.1.S1_at--529--1811Chr03:12420992..12421016 (25 bp)
ACCCAATTTTATTGCGACCCTATCT
LOC_Os03g21770
OsAffx.3290.1.S1_at--273--10171Chr03:12421012..12421036 (25 bp)
TATCTTAAATTCCACCCATCTGCAA
LOC_Os03g21770
OsAffx.3290.1.S1_at--246--6031Chr03:12421186..12421210 (25 bp)
GAGATGCATCTGTTAGGGATCACAA
LOC_Os03g21770
Target Sequence 
AATCCATGCTCAGAGGTTGAAGCGATGGCTAAATTGAGTGGAGCAAACCATGTGGTACAGATGTATTGTGCTTGGTCAGA
GAATGCGGTGTCAGGTCTTGGTTATGTGTACATTGGAATGGAAGTTTTTGAAAGCAATTTGGATGAATACCTTGATGCAA
GAAAAGGAGTAAATCTACAAAAGAGCACAACTATATTTGCTGAAATAATGGCTGGAGTGAAGGAAATACACGAAGCAGGA
ATCATACATAGGGACTTGAAGCCTCTCAATATTCTCATAGACAGTGATGATCACATTTATATCACTGACTTTGGCATCTC
AAAGATAAAGCCATATCCAAGTGCAAATGTGAGGTATCCAGGTGGCCCTCAGTATGGAACCCAATTTTATTGCGACCCTA
TCTTAAATTCCACCCATCTGCAACATGATGAGAAGGTGGACTTTTACAGCTGTGGTATAATTTACTTTGAGATGCATCTG
TTAGGGATCACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3290.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis