Browse Element(s) Details


Os.26538.1.S1_at

Description gb:AY466471.1
DB_XREF= gi:39579225
GEN=RF2b
TID=Os.26538.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26538 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) bZIP transcription factor RF2b (RF2b) mRNA, complete cds.
PROD=bZIP transcription factor RF2b
FL= gb:AK070466.1 gb:AK059473.1 gb:AY466471.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2180011/11Transcription factor RF2b, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21740Os.27048.1.S1_at11/113+12401416..12410317Valyl-tRNA synthetase, putative
LOC_Os03g21750OsAffx.12979.1.S1_at11/113+12412084..12412909hypothetical protein
LOC_Os03g21759NANA3+12415573..12416581hypothetical protein
LOC_Os03g21770OsAffx.3290.1.S1_at11/113+12419496..12421543Protein kinase domain containing protein
LOC_Os03g21780Os.53789.1.S1_at11/113+12423756..12426046expressed protein
LOC_Os03g21780OsAffx.26997.1.S1_x_at1/113+12423756..12426046expressed protein
LOC_Os03g21790Os.13756.1.S1_s_at11/113+12426071..12428431Cupin family protein, expressed
LOC_Os03g21800Os.26538.1.S1_at11/113+12430913..12435162Transcription factor RF2b, putative, expressed
LOC_Os03g21800OsAffx.14261.4.S1_x_at10/113+12430913..12435162Transcription factor RF2b, putative, expressed
LOC_Os03g21810Os.24536.1.S1_at11/113+12437275..12447855Insulinase containing protein, expressed
LOC_Os03g21810OsAffx.18721.1.S1_at1/113+12437275..12447855Insulinase containing protein, expressed
LOC_Os03g21820Os.2367.1.S1_at11/113+12448139..12449435Alpha-expansin 10 precursor, putative, expressed
LOC_Os03g21830Os.11463.1.S1_at11/113+12456850..12458968expressed protein
LOC_Os03g21840Os.48943.1.S1_at8/113+12459687..12461931reticulon family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26538.1.S1_at--1133--5871Chr03:12434648..12434672 (25 bp)
GAGCCCACAGTTCCATTAGATTCGT
LOC_Os03g21800
Os.26538.1.S1_at--1136--10031Chr03:12434664..12434688 (25 bp)
TAGATTCGTTTGTTCATAGCCTGAC
LOC_Os03g21800
Os.26538.1.S1_at--769--9091Chr03:12434699..12434723 (25 bp)
TGCTCCCTGTTCTGTAAGCTTATTA
LOC_Os03g21800
Os.26538.1.S1_at--87--3171Chr03:12434761..12434785 (25 bp)
AATTGCAGTGGCTGATCTATTCCCT
LOC_Os03g21800
Os.26538.1.S1_at--1110--6411Chr03:12434774..12434798 (25 bp)
GATCTATTCCCTTCTGTGGACATGA
LOC_Os03g21800
Os.26538.1.S1_at--265--7531Chr03:12434789..12434813 (25 bp)
GTGGACATGATTCCTGTACCCCTCA
LOC_Os03g21800
Os.26538.1.S1_at--1096--9951Chr03:12434805..12434829 (25 bp)
TACCCCTCACATCCATTTGTTTTGG
LOC_Os03g21800
Os.26538.1.S1_at--649--151Chr03:12434857..12434881 (25 bp)
ATTATCAGGGCACCAGGACTGGCTT
LOC_Os03g21800
Os.26538.1.S1_at--36--331Chr03:12434891..12434915 (25 bp)
ATACTGTGTTCTTTGTGGTCGTGTG
LOC_Os03g21800
Os.26538.1.S1_at--121--7511Chr03:12434905..12434929 (25 bp)
GTGGTCGTGTGGACTTGTTCACCAT
LOC_Os03g21800
Os.26538.1.S1_at--278--10531Chr03:12434922..12434946 (25 bp)
TTCACCATGGATTCAATTCAACCTT
LOC_Os03g21800
Target Sequence 
GAGCCCACAGTTCCATTAGATTCGTTTGTTCATAGCCTGACATCCTCGCGCTGCTCCCTGTTCTGTAAGCTTATTATTTA
TTCAATTCGTTCGATTTAGTTGAAATTGTTCGTAATTGCAGTGGCTGATCTATTCCCTTCTGTGGACATGATTCCTGTAC
CCCTCACATCCATTTGTTTTGGGTTCATCTCCTGTGTGCTGTGTTTGGGATTATCAGGGCACCAGGACTGGCTTTCTCCG
AGAATACTGTGTTCTTTGTGGTCGTGTGGACTTGTTCACCATGGATTCAATTCAACCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26538.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis