Browse Element(s) Details


OsAffx.18721.1.S1_at

Description tigr:9639.m00670
TID=OsAffx.18721.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0732011/11hypothetical protein
LOC_Os03g218101/11Insulinase containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g07260OsAffx.18719.2.S1_at11/1111+3653727..3657157Leucine Rich Repeat family protein, expressed
LOC_Os11g07270OsAffx.18719.1.S1_at11/1111+3660514..3663672Leucine Rich Repeat family protein, expressed
LOC_Os11g07280Os.11596.1.S1_at11/1111+3663973..3669404Adaptin N terminal region family protein, expressed
LOC_Os11g07280Os.11596.1.S2_at11/1111+3663973..3669404Adaptin N terminal region family protein, expressed
LOC_Os11g07290OsAffx.18720.1.S1_at10/1111+3670970..3673200expressed protein
LOC_Os11g07290Os.53293.1.S1_at1/1111+3670970..3673200expressed protein
LOC_Os11g07300NANA11+3676903..3677767retrotransposon protein, putative, LINE subclass
LOC_Os11g07310OsAffx.7034.1.S1_at11/1111+3678455..3679068hypothetical protein
LOC_Os11g07320OsAffx.18721.1.S1_at11/1111+3681740..3683554hypothetical protein
LOC_Os11g07330OsAffx.30859.1.S1_at11/1111+3685238..3686956hypothetical protein
LOC_Os11g07340OsAffx.21500.2.S1_at11/1111+3698852..3699721hypothetical protein
LOC_Os11g07340OsAffx.21500.2.S1_x_at11/1111+3698852..3699721hypothetical protein
LOC_Os11g07350OsAffx.30859.2.S1_at11/1111+3700852..3701844hypothetical protein
LOC_Os11g07360OsAffx.18723.1.S1_at11/1111+3703861..3705546hypothetical protein
LOC_Os11g07370OsAffx.18724.1.S1_at11/1111+3707085..3708963hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004222molecular_functionmetalloendopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18721.1.S1_at--583--2091Chr11:3682311..3682335 (25 bp)
ACATCATCTGCTTCCTGGTTTACGA
LOC_Os11g07320
OsAffx.18721.1.S1_at--310--8551Chr11:3682296..3682320 (25 bp)
TGGTTTACGACCACGATTACTGCGT
LOC_Os11g07320
OsAffx.18721.1.S1_at--195--3831Chr11:3682225..3682249 (25 bp)
CTGCCATCAGTCTTTGCCTACAAAA
LOC_Os11g07320
OsAffx.18721.1.S1_at--33--2451Chr11:3682203..3682227 (25 bp)
AAAATCAGTCTTCGCCATGTTTACG
LOC_Os11g07320
OsAffx.18721.1.S1_at--562--731Chr11:3682187..3682211 (25 bp)
ATGTTTACGGTGCATTCCCAGCGAG
LOC_Os11g07320
OsAffx.18721.1.S1_at--341--5471Chr11:3682033..3682057 (25 bp)
GAACTGTCCACCAATGTGTCAGAGA
LOC_Os11g07320
OsAffx.18721.1.S1_at--1129--6031Chr11:3681994..3682018 (25 bp)
GAGATCTTGGCTGCTCTTGAAGAGA
LOC_Os11g07320
OsAffx.18721.1.S1_at--967--71Chr11:3681939..3681963 (25 bp)
AGGCGTATAGCCTTCTTATTAACGA
LOC_Os11g07320
OsAffx.18721.1.S1_at--944--10531Chr11:3681898..3681922 (25 bp)
TTCAGGTCTCTCTTGGTGCTGCCAA
LOC_Os11g07320
OsAffx.18721.1.S1_at--733--5231Chr11:3681836..3681860 (25 bp)
GAATAGCCAGGCTTGTTCCATCTGC
LOC_Os11g07320
OsAffx.18721.1.S1_at--528--5412Chr03:12447175..12447460 (25 bp)
GAAGCTGAACTCCAAGGCTCTGATG
LOC_Os03g21810
Target Sequence 
ACATCATCTGCTTCCTGGTTTACGACCACGATTACTGCGTGAAAGAGAAATTTTGGAAGATCATGCTTGACACGACGAAC
AAGACGCTGCCATCAGTCTTTGCCTACAAAAATCAGTCTTCGCCATGTTTACGGTGCATTCCCAGCGAGATCTCCGGTTA
CCTCCTCACTTCATGCAGCAGCGATTCAACAAAGCCGGCAGCCATCGTCGTCGACGTACTACCTGCAGCTGCAGCGACGA
CGACGACGACGACTGCCGTCATCAGTAAGAAATCACATGAACTGTCCACCAATGTGTCAGAGATGGCTTCTCCTGAGGAG
ATCTTGGCTGCTCTTGAAGAGATACCTGATTTGGGATGTGACGATTTGCTCGAGGCGTATAGCCTTCTTATTAACGATGG
CAGTGGACGCCGATTCAGGTCTCTCTTGGTGCTGCCAATGGGTCTCAGGAAGAAATGGCTGCTGATTGAAGTGAAGAATA
GCCAGGCTTGTTCCATCTGCTCCGCATGCACAACCCAACCCACAACATGGATGGGGGCTGAAGCTGAACTCCAAGGCTCT
GATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18721.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis