Browse Element(s) Details


OsAffx.18723.1.S1_at

Description tigr:9639.m00674
TID=OsAffx.18723.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0736011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g07310OsAffx.7034.1.S1_at11/1111+3678455..3679068hypothetical protein
LOC_Os11g07320OsAffx.18721.1.S1_at11/1111+3681740..3683554hypothetical protein
LOC_Os11g07330OsAffx.30859.1.S1_at11/1111+3685238..3686956hypothetical protein
LOC_Os11g07340OsAffx.21500.2.S1_at11/1111+3698852..3699721hypothetical protein
LOC_Os11g07340OsAffx.21500.2.S1_x_at11/1111+3698852..3699721hypothetical protein
LOC_Os11g07350OsAffx.30859.2.S1_at11/1111+3700852..3701844hypothetical protein
LOC_Os11g07360OsAffx.18723.1.S1_at11/1111+3703861..3705546hypothetical protein
LOC_Os11g07370OsAffx.18724.1.S1_at11/1111+3707085..3708963hypothetical protein
LOC_Os11g07380OsAffx.18725.1.S1_at11/1111+3710749..3712469hypothetical protein
LOC_Os11g07390OsAffx.30860.1.S1_at11/1111+3714694..3715340hypothetical protein
LOC_Os11g07390Os.56305.1.S1_at1/1111+3714694..3715340hypothetical protein
LOC_Os11g07400Os.56305.1.S1_at11/1111+3717816..3719505expressed protein
LOC_Os11g07410OsAffx.30861.1.S1_at11/1111+3728371..3728615hypothetical protein
LOC_Os11g07420OsAffx.30862.1.S1_at11/1111+3729946..3731097hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18723.1.S1_at--809--2231Chr11:3704422..3704446 (25 bp)
ACAATTCCCCATCGTGAGCATGGAT
LOC_Os11g07360
OsAffx.18723.1.S1_at--989--5811Chr11:3704397..3704421 (25 bp)
GACCCTGATATCATATGCTTCCAAG
LOC_Os11g07360
OsAffx.18723.1.S1_at--757--3051Chr11:3704339..3704363 (25 bp)
AATCGTGGTACATCATGCTCGACAC
LOC_Os11g07360
OsAffx.18723.1.S1_at--638--2511Chr11:3704305..3704329 (25 bp)
AACATTGATGTCAGTCTGCCGTCTC
LOC_Os11g07360
OsAffx.18723.1.S1_at--255--7091Chr11:3704275..3704299 (25 bp)
GTCAAGCTCGCTTCAATTGTCTTAT
LOC_Os11g07360
OsAffx.18723.1.S1_at--992--10451Chr11:3704242..3704266 (25 bp)
TTACTTTGTTAGCACGGTCTCTCAC
LOC_Os11g07360
OsAffx.18723.1.S1_at--256--7171Chr11:3704226..3704250 (25 bp)
GTCTCTCACTGCTTTAATTCTTCTG
LOC_Os11g07360
OsAffx.18723.1.S1_at--200--3271Chr11:3704174..3704198 (25 bp)
CAAAGCCGGCACTGATGATCATCGA
LOC_Os11g07360
OsAffx.18723.1.S1_at--1132--3051Chr11:3704102..3704126 (25 bp)
AATCTTCATGCGAGTCATCTGCCAA
LOC_Os11g07360
OsAffx.18723.1.S1_at--550--6791Chr11:3703979..3704003 (25 bp)
GTTATGACAATAATGGCCGCCGGCT
LOC_Os11g07360
OsAffx.18723.1.S1_at--838--4831Chr11:3703893..3703917 (25 bp)
GCTAGTGAAGCCTGTTCGGTTTGTT
LOC_Os11g07360
Target Sequence 
ACAATTCCCCATCGTGAGCATGGATGACCCTGATATCATATGCTTCCAAGTGCCCGAAGAACACAAGATTGGAAGAAAAA
TGCAATCGTGGTACATCATGCTCGACACAAGCAGCAAAACATTGATGTCAGTCTGCCGTCTCGATGAGTCAAGCTCGCTT
CAATTGTCTTATGGATATGCTTACTTTGTTAGCACGGTCTCTCACTGCTTTAATTCTTCTGATGATGGGGGGTTCAACAA
TGATGTAACAAAGCCGGCACTGATGATCATCGATGATAAGGTGGCAACAAAAAATAATATCATCGCTAATGATTCATTGC
AATCTTCATGCGAGTCATCTGCCAAAAATTCCAAGGTCAATTCTCCTAAGGAGATTTTGGCTCTTCTCCAAGAGATACCG
GAGTTGTCTCGTGATGATTTGCTGAGAGCGTATAGCTTGCTTTGTTATGACAATAATGGCCGCCGGCTCAGTTCACTTTT
GGGGCTCCCAATGAGTCTGAGGAAGCCATGGCTGTTGATGGAGATTAAGGCTAGTGAAGCCTGTTCGGTTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18723.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis