Browse Element(s) Details


OsAffx.30859.1.S1_at

Description tigr:9639.m00671
TID=OsAffx.30859.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0733011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g07270OsAffx.18719.1.S1_at11/1111+3660514..3663672Leucine Rich Repeat family protein, expressed
LOC_Os11g07280Os.11596.1.S1_at11/1111+3663973..3669404Adaptin N terminal region family protein, expressed
LOC_Os11g07280Os.11596.1.S2_at11/1111+3663973..3669404Adaptin N terminal region family protein, expressed
LOC_Os11g07290OsAffx.18720.1.S1_at10/1111+3670970..3673200expressed protein
LOC_Os11g07290Os.53293.1.S1_at1/1111+3670970..3673200expressed protein
LOC_Os11g07300NANA11+3676903..3677767retrotransposon protein, putative, LINE subclass
LOC_Os11g07310OsAffx.7034.1.S1_at11/1111+3678455..3679068hypothetical protein
LOC_Os11g07320OsAffx.18721.1.S1_at11/1111+3681740..3683554hypothetical protein
LOC_Os11g07330OsAffx.30859.1.S1_at11/1111+3685238..3686956hypothetical protein
LOC_Os11g07340OsAffx.21500.2.S1_at11/1111+3698852..3699721hypothetical protein
LOC_Os11g07340OsAffx.21500.2.S1_x_at11/1111+3698852..3699721hypothetical protein
LOC_Os11g07350OsAffx.30859.2.S1_at11/1111+3700852..3701844hypothetical protein
LOC_Os11g07360OsAffx.18723.1.S1_at11/1111+3703861..3705546hypothetical protein
LOC_Os11g07370OsAffx.18724.1.S1_at11/1111+3707085..3708963hypothetical protein
LOC_Os11g07380OsAffx.18725.1.S1_at11/1111+3710749..3712469hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30859.1.S1_at--61--1431Chr11:3685790..3685814 (25 bp)
AGAACACCCCATCGTGAGCATAGAC
LOC_Os11g07330
OsAffx.30859.1.S1_at--1134--3491Chr11:3685695..3685719 (25 bp)
CATGGATGATCCTCTTCGACACAAG
LOC_Os11g07330
OsAffx.30859.1.S1_at--1045--2751Chr11:3685666..3685690 (25 bp)
AAGACACTCTTGTCAGCGATCTCCT
LOC_Os11g07330
OsAffx.30859.1.S1_at--1055--831Chr11:3685635..3685659 (25 bp)
ATGGACGCAATTTCCTTCCTAGCAA
LOC_Os11g07330
OsAffx.30859.1.S1_at--1141--5871Chr11:3685563..3685587 (25 bp)
GAGCGATGTCAGAGCCAGCTGTGAT
LOC_Os11g07330
OsAffx.30859.1.S1_at--415--4731Chr11:3685546..3685570 (25 bp)
GCTGTGATCATCGACAAGGCGCCAA
LOC_Os11g07330
OsAffx.30859.1.S1_at--858--4431Chr11:3685513..3685537 (25 bp)
GCCATCATCGGTGATTCAGTGCGAA
LOC_Os11g07330
OsAffx.30859.1.S1_at--624--6091Chr11:3685480..3685504 (25 bp)
GAGTCATCTGGTGCTAAACATTTCA
LOC_Os11g07330
OsAffx.30859.1.S1_at--99--6131Chr11:3685455..3685479 (25 bp)
GAGTGTCAGGATCAGTAGCTTCTCC
LOC_Os11g07330
OsAffx.30859.1.S1_at--59--8871Chr11:3685430..3685454 (25 bp)
TGATGAGATCTTTGCTGCCCTGGAA
LOC_Os11g07330
OsAffx.30859.1.S1_at--1066--351Chr11:3685347..3685371 (25 bp)
ATAATGGCCGCCGATTCAAATCTCT
LOC_Os11g07330
Target Sequence 
AGAACACCCCATCGTGAGCATAGACGATCCCCACCTCATCAGCTTCATGGTGGATGAGCGAGAATCCGAGGGGAGATATT
GCCGCATCAAAGAAACATGGATGATCCTCTTCGACACAAGGAGCAAGACACTCTTGTCAGCGATCTCCTGCAGCCATGGA
CGCAATTTCCTTCCTAGCAAGGTCTCCAGCTACTTCACTTCCTCCAATGGAAGCTGCAGCAATGGCGGAGCGATGTCAGA
GCCAGCTGTGATCATCGACAAGGCGCCAACACATGATGCCATCATCGGTGATTCAGTGCGAATTTCATGTGAGTCATCTG
GTGCTAAACATTTCAGAGTGTCAGGATCAGTAGCTTCTCCTGATGAGATCTTTGCTGCCCTGGAAGAGATACCGGAGTTG
TCTCGTCATGATTTGCTAAGAGCTTATAGCATGCTTTGTCATGATAATGGCCGCCGATTCAAATCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30859.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis