Browse Element(s) Details


OsAffx.21500.2.S1_at

Description tigr:9639.m00672
TID=OsAffx.21500.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0734011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g07300NANA11+3676903..3677767retrotransposon protein, putative, LINE subclass
LOC_Os11g07310OsAffx.7034.1.S1_at11/1111+3678455..3679068hypothetical protein
LOC_Os11g07320OsAffx.18721.1.S1_at11/1111+3681740..3683554hypothetical protein
LOC_Os11g07330OsAffx.30859.1.S1_at11/1111+3685238..3686956hypothetical protein
LOC_Os11g07340OsAffx.21500.2.S1_at11/1111+3698852..3699721hypothetical protein
LOC_Os11g07340OsAffx.21500.2.S1_x_at11/1111+3698852..3699721hypothetical protein
LOC_Os11g07350OsAffx.30859.2.S1_at11/1111+3700852..3701844hypothetical protein
LOC_Os11g07360OsAffx.18723.1.S1_at11/1111+3703861..3705546hypothetical protein
LOC_Os11g07370OsAffx.18724.1.S1_at11/1111+3707085..3708963hypothetical protein
LOC_Os11g07380OsAffx.18725.1.S1_at11/1111+3710749..3712469hypothetical protein
LOC_Os11g07390OsAffx.30860.1.S1_at11/1111+3714694..3715340hypothetical protein
LOC_Os11g07390Os.56305.1.S1_at1/1111+3714694..3715340hypothetical protein
LOC_Os11g07400Os.56305.1.S1_at11/1111+3717816..3719505expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21500.2.S1_at--102--9672Chr11:3699121..3699145 (25 bp)
TCACCGGCAAGAGGAAATGACGTCG
LOC_Os11g07340
OsAffx.21500.2.S1_at--754--1771Chr11:3699123..3699147 (25 bp)
ACCGGCAAGAGGAAATGACGTCGGC
LOC_Os11g07340
OsAffx.21500.2.S1_at--834--4011Chr11:3699141..3699165 (25 bp)
CGTCGGCGGCGATTTTGTGGTGGGA
LOC_Os11g07340
OsAffx.21500.2.S1_at--696--9451Chr11:3699143..3699167 (25 bp)
TCGGCGGCGATTTTGTGGTGGGAGA
LOC_Os11g07340
OsAffx.21500.2.S1_at--485--3931Chr11:3699211..3699235 (25 bp)
CGGCGAATCGGGACCAACGCGGTAT
LOC_Os11g07340
OsAffx.21500.2.S1_at--729--4571Chr11:3699213..3699237 (25 bp)
GCGAATCGGGACCAACGCGGTATCC
LOC_Os11g07340
OsAffx.21500.2.S1_at--782--5251Chr11:3699215..3699239 (25 bp)
GAATCGGGACCAACGCGGTATCCGG
LOC_Os11g07340
OsAffx.21500.2.S1_at--671--8051Chr11:3699221..3699245 (25 bp)
GGACCAACGCGGTATCCGGAAATAT
LOC_Os11g07340
OsAffx.21500.2.S1_at--683--5771Chr11:3699222..3699246 (25 bp)
GACCAACGCGGTATCCGGAAATATG
LOC_Os11g07340
OsAffx.21500.2.S1_at--414--1691Chr11:3699223..3699247 (25 bp)
ACCAACGCGGTATCCGGAAATATGG
LOC_Os11g07340
OsAffx.21500.2.S1_at--174--4371Chr11:3699224..3699248 (25 bp)
CCAACGCGGTATCCGGAAATATGGG
LOC_Os11g07340
Target Sequence 
TCACCGGCAAGAGGAAATGACGTCGGCGGCGATTTTGTGGTGGGAGAGGGAAGGCCGACGGGGGAGTGCGGCCGGGATTT
CCGAAGGCGGCGGCGAATCGGGACCAACGCGGTATCCGGAAATATGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21500.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis