Browse Element(s) Details


OsAffx.30860.1.S1_at

Description tigr:9639.m00677
TID=OsAffx.30860.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0739011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g07340OsAffx.21500.2.S1_at11/1111+3698852..3699721hypothetical protein
LOC_Os11g07340OsAffx.21500.2.S1_x_at11/1111+3698852..3699721hypothetical protein
LOC_Os11g07350OsAffx.30859.2.S1_at11/1111+3700852..3701844hypothetical protein
LOC_Os11g07360OsAffx.18723.1.S1_at11/1111+3703861..3705546hypothetical protein
LOC_Os11g07370OsAffx.18724.1.S1_at11/1111+3707085..3708963hypothetical protein
LOC_Os11g07380OsAffx.18725.1.S1_at11/1111+3710749..3712469hypothetical protein
LOC_Os11g07390OsAffx.30860.1.S1_at11/1111+3714694..3715340hypothetical protein
LOC_Os11g07390Os.56305.1.S1_at1/1111+3714694..3715340hypothetical protein
LOC_Os11g07400Os.56305.1.S1_at11/1111+3717816..3719505expressed protein
LOC_Os11g07410OsAffx.30861.1.S1_at11/1111+3728371..3728615hypothetical protein
LOC_Os11g07420OsAffx.30862.1.S1_at11/1111+3729946..3731097hypothetical protein
LOC_Os11g07430Os.53470.1.S1_at11/1111+3733025..3734936expressed protein
LOC_Os11g07440Os.47344.1.A1_at11/1111+3735532..3739424Neutral/alkaline invertase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30860.1.S1_at--848--3391Chr11:3715136..3715278 (25 bp)
CAGCATCCCACTATGCCGATATGAT
LOC_Os11g07390
OsAffx.30860.1.S1_at--1154--8771Chr11:3715106..3715130 (25 bp)
TGTTTACCAACAAAAGCCATCTTAT
LOC_Os11g07390
OsAffx.30860.1.S1_at--146--10491Chr11:3715073..3715097 (25 bp)
TTACATTCCTTGCAAGATCTCCACT
LOC_Os11g07390
OsAffx.30860.1.S1_at--68--6371Chr11:3715058..3715082 (25 bp)
GATCTCCACTTTATACACAAACCAT
LOC_Os11g07390
OsAffx.30860.1.S1_at--260--7431Chr11:3714926..3715044 (25 bp)
GTGTTACAAAGCCACCAGTGTCAAG
LOC_Os11g07390
OsAffx.30860.1.S1_at--270--7451Chr11:3714909..3714933 (25 bp)
GTGTCAAGGATAGCTTCTCCCGAGG
LOC_Os11g07390
OsAffx.30860.1.S1_at--26--3811Chr11:3714893..3714917 (25 bp)
CTCCCGAGGAGATCTTGGTGGCGCT
LOC_Os11g07390
OsAffx.30860.1.S1_at--198--8631Chr11:3714878..3714902 (25 bp)
TGGTGGCGCTCGAAGCGATTCCCGA
LOC_Os11g07390
OsAffx.30860.1.S1_at--73--4051Chr11:3714863..3714887 (25 bp)
CGATTCCCGATCATGCTTGTGATGA
LOC_Os11g07390
OsAffx.30860.1.S1_at--1112--3771Chr11:3714780..3714804 (25 bp)
CTCGGGCTCCCAATGGGTCTAAGGA
LOC_Os11g07390
OsAffx.30860.1.S1_at--1037--911Chr11:3714731..3714755 (25 bp)
AGGCTTATCAAAACATTTACTCTAC
LOC_Os11g07390
Target Sequence 
CAGCATCCCACTATGCCGATATGATAATGATGTTTACCAACAAAAGCCATCTTATGGACACACTTACATTCCTTGCAAGA
TCTCCACTTTATACACAAACCATAGTAGCAACAATGGTGTTACAAAGCCACCAGTGTCAAGGATAGCTTCTCCCGAGGAG
ATCTTGGTGGCGCTCGAAGCGATTCCCGATCATGCTTGTGATGATTTGCTGAAAGCGTATATCATTCTTTGCCGTGACAA
TGGCCGCCTATTTAGGTCTCTTCTCGGGCTCCCAATGGGTCTAAGGAAGAAATGGTTGATGATAGAAATCAAGGCTTATC
AAAACATTTACTCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30860.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis