Browse Element(s) Details


OsAffx.30862.1.S1_at

Description tigr:9639.m00680
TID=OsAffx.30862.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0742011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g07360OsAffx.18723.1.S1_at11/1111+3703861..3705546hypothetical protein
LOC_Os11g07370OsAffx.18724.1.S1_at11/1111+3707085..3708963hypothetical protein
LOC_Os11g07380OsAffx.18725.1.S1_at11/1111+3710749..3712469hypothetical protein
LOC_Os11g07390OsAffx.30860.1.S1_at11/1111+3714694..3715340hypothetical protein
LOC_Os11g07390Os.56305.1.S1_at1/1111+3714694..3715340hypothetical protein
LOC_Os11g07400Os.56305.1.S1_at11/1111+3717816..3719505expressed protein
LOC_Os11g07410OsAffx.30861.1.S1_at11/1111+3728371..3728615hypothetical protein
LOC_Os11g07420OsAffx.30862.1.S1_at11/1111+3729946..3731097hypothetical protein
LOC_Os11g07430Os.53470.1.S1_at11/1111+3733025..3734936expressed protein
LOC_Os11g07440Os.47344.1.A1_at11/1111+3735532..3739424Neutral/alkaline invertase, putative, expressed
LOC_Os11g07450Os.51933.1.S1_at11/1111+3745176..3751094Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g07450Os.33152.1.S1_x_at11/1111+3745176..3751094Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g07460Os.46782.1.S1_at10/1111+3754391..3757470TCP family transcription factor containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30862.1.S1_at--890--5151Chr11:3730169..3730193 (25 bp)
GCAACCGGCGGCATTGCCTGCTCGA
LOC_Os11g07420
OsAffx.30862.1.S1_at--410--2631Chr11:3730167..3730191 (25 bp)
AACCGGCGGCATTGCCTGCTCGACA
LOC_Os11g07420
OsAffx.30862.1.S1_at--382--71Chr11:3730157..3730181 (25 bp)
ATTGCCTGCTCGACACCCGAACCGT
LOC_Os11g07420
OsAffx.30862.1.S1_at--513--511Chr11:3730125..3730149 (25 bp)
ATCGACGGCGGAGCCACGCTCAAGT
LOC_Os11g07420
OsAffx.30862.1.S1_at--200--591Chr11:3730023..3730047 (25 bp)
ATCCACACCTGGACAATGAGGATGG
LOC_Os11g07420
OsAffx.30862.1.S1_at--755--5591Chr11:3730012..3730036 (25 bp)
GACAATGAGGATGGACAACGACGGC
LOC_Os11g07420
OsAffx.30862.1.S1_at--200--2211Chr11:3729998..3730022 (25 bp)
ACAACGACGGCGACATGTCATCATG
LOC_Os11g07420
OsAffx.30862.1.S1_at--847--2591Chr11:3729996..3730020 (25 bp)
AACGACGGCGACATGTCATCATGGA
LOC_Os11g07420
OsAffx.30862.1.S1_at--310--1851Chr11:3729995..3730019 (25 bp)
ACGACGGCGACATGTCATCATGGAC
LOC_Os11g07420
OsAffx.30862.1.S1_at--142--5751Chr11:3729993..3730017 (25 bp)
GACGGCGACATGTCATCATGGACCA
LOC_Os11g07420
OsAffx.30862.1.S1_at--503--3931Chr11:3729991..3730015 (25 bp)
CGGCGACATGTCATCATGGACCATG
LOC_Os11g07420
Target Sequence 
GCAACCGGCGGCATTGCCTGCTCGACACCCGAACCGTCTGCGCCATCGACGGCGGAGCCACGCTCAAGTTCGTCGACATC
TTCCCGCGATGCTGCTGCGGCCGCCGCGGCGCGACGCAGTGCGACCATTCCGGCGGCGCCTTCGTCATCCACACCTGGAC
AATGAGGATGGACAACGACGGCGACATGTCATCATGGACCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30862.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis