Browse Element(s) Details


Os.47344.1.A1_at

Description gb:AK070884.1
DB_XREF= gi:32980907
TID=Os.47344.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47344 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023068M15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023068M15, full insert sequence.
FL= gb:AK070884.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0744011/11Neutral/alkaline invertase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g07380OsAffx.18725.1.S1_at11/1111+3710749..3712469hypothetical protein
LOC_Os11g07390OsAffx.30860.1.S1_at11/1111+3714694..3715340hypothetical protein
LOC_Os11g07390Os.56305.1.S1_at1/1111+3714694..3715340hypothetical protein
LOC_Os11g07400Os.56305.1.S1_at11/1111+3717816..3719505expressed protein
LOC_Os11g07410OsAffx.30861.1.S1_at11/1111+3728371..3728615hypothetical protein
LOC_Os11g07420OsAffx.30862.1.S1_at11/1111+3729946..3731097hypothetical protein
LOC_Os11g07430Os.53470.1.S1_at11/1111+3733025..3734936expressed protein
LOC_Os11g07440Os.47344.1.A1_at11/1111+3735532..3739424Neutral/alkaline invertase, putative, expressed
LOC_Os11g07450Os.51933.1.S1_at11/1111+3745176..3751094Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g07450Os.33152.1.S1_x_at11/1111+3745176..3751094Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g07460Os.46782.1.S1_at10/1111+3754391..3757470TCP family transcription factor containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004564molecular_functionbeta-fructofuranosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47344.1.A1_at--1154--8091Chr11:3736057..3736081 (25 bp)
GGACGGCTGGCCAGAGTACTACGAT
LOC_Os11g07440
Os.47344.1.A1_at--16--9911Chr11:3736041..3736065 (25 bp)
TACTACGATGGCAAGCTGGGACGGT
LOC_Os11g07440
Os.47344.1.A1_at--30--5351Chr11:3735997..3736021 (25 bp)
GAAGTTCCAGACATGGTCCATCGCT
LOC_Os11g07440
Os.47344.1.A1_at--1025--1751Chr11:3735968..3735992 (25 bp)
ACCTCGTAGCCCGTATGATGCTGGA
LOC_Os11g07440
Os.47344.1.A1_at--1069--4231Chr11:3735958..3735982 (25 bp)
CCGTATGATGCTGGAGGACCCGTCG
LOC_Os11g07440
Os.47344.1.A1_at--976--5811Chr11:3735942..3735966 (25 bp)
GACCCGTCGACGCTGATGATGATCT
LOC_Os11g07440
Os.47344.1.A1_at--68--9491Chr11:3735920..3735944 (25 bp)
TCTCCATGGAGGAAGACCGGCCGGT
LOC_Os11g07440
Os.47344.1.A1_at--402--6491Chr11:3735724..3735748 (25 bp)
GATAGATCCAAGTCGTTTCAGAGCA
LOC_Os11g07440
Os.47344.1.A1_at--617--6831Chr11:3735710..3735734 (25 bp)
GTTTCAGAGCAATTTTGTCCAACTT
LOC_Os11g07440
Os.47344.1.A1_at--459--7271Chr11:3735694..3735718 (25 bp)
GTCCAACTTTTCGTATCTGGCTTCA
LOC_Os11g07440
Os.47344.1.A1_at--822--5691Chr11:3735547..3735571 (25 bp)
GACTTTCTGTTAATATACTCCTCAC
LOC_Os11g07440
Target Sequence 
GGACGGCTGGCCAGAGTACTACGATGGCAAGCTGGGACGGTTNATCGGCAAGCAGGCCAGGAAGTTCCAGACATGGTCCA
TCGCTGGCTACCTCGTAGCCCGTATGATGCTGGAGGACCCGTCGACGCTGATGATGATCTCCATGGAGGAAGACCGGCCG
GTGAAGCCGACCATGCGACGGTCNGCATCATGGAATGCCTGAAATGTTTTGATAGAANTTTTTTTTTCCCAAAGAGAGGT
TCAATGTGGAAACTTATAGGAGTTTTGTCCAAACATGAAAATGGGGTTCAAAATTTACTGTAACTGTACTGTCAGTTAGG
ACAGAAGTGTATACGATAGATCCAAGTCGTTTCAGAGCAATTTTGTCCAACTTTTCGTATCTGGCTTCATCAATCCAACA
GAGAAGAAGTTTTTGTTGGTGAAACATTTTTGCAATAATTAAACAGTTTTGTCTTGACATATATACTAGCATATGTTTCT
GTGANNNANAANNNNNNNNAANNCTTTGTAGGACTTTCTGTTAATATACTCCTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47344.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis