Browse Element(s) Details


Os.33152.1.S1_x_at

Description gb:AK101592.1
DB_XREF= gi:32986801
TID=Os.33152.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33152 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033051D17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033051D17, full insert sequence.
FL= gb:AK101592.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0745011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g07410OsAffx.30861.1.S1_at11/1111+3728371..3728615hypothetical protein
LOC_Os11g07420OsAffx.30862.1.S1_at11/1111+3729946..3731097hypothetical protein
LOC_Os11g07430Os.53470.1.S1_at11/1111+3733025..3734936expressed protein
LOC_Os11g07440Os.47344.1.A1_at11/1111+3735532..3739424Neutral/alkaline invertase, putative, expressed
LOC_Os11g07450Os.51933.1.S1_at11/1111+3745176..3751094Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g07450Os.33152.1.S1_x_at11/1111+3745176..3751094Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g07460Os.46782.1.S1_at10/1111+3754391..3757470TCP family transcription factor containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33152.1.S1_x_at--670--9711Chr11:3748985..3749357 (25 bp)
TCAAGATGATCTCTCAGCGCCATAT
LOC_Os11g07450
Os.33152.1.S1_x_at--980--1651Chr11:3749348..3749372 (25 bp)
AGCGCCATATCTCTAGTGTTCCTGA
LOC_Os11g07450
Os.33152.1.S1_x_at--928--2931Chr11:3749995..3750019 (25 bp)
AAGGCTGCAGCTGAACCATGTTGAT
LOC_Os11g07450
Os.33152.1.S1_x_at--539--951Chr11:3750032..3750137 (25 bp)
AGGACATACGTCTGCAACCAATGCT
LOC_Os11g07450
Os.33152.1.S1_x_at--1007--5171Chr11:3750141..3750165 (25 bp)
GCAAGTTCATCGATTTCCTGCTCTA
LOC_Os11g07450
Os.33152.1.S1_x_at--367--9091Chr11:3750159..3750183 (25 bp)
TGCTCTACTGGTTCCGTGTATCAAT
LOC_Os11g07450
Os.33152.1.S1_x_at--1099--4711Chr11:3750757..3750781 (25 bp)
GCTGGTATGGTTTCATGTGCCGAAC
LOC_Os11g07450
Os.33152.1.S1_x_at--727--1731Chr11:3750790..3750814 (25 bp)
ACCGGCCTGACCATGCTAAGAAGCT
LOC_Os11g07450
Os.33152.1.S1_x_at--307--2751Chr11:3750807..3750831 (25 bp)
AAGAAGCTCAACCATGTCTGTCGTC
LOC_Os11g07450
Os.33152.1.S1_x_at--171--771Chr11:3750820..3750844 (25 bp)
ATGTCTGTCGTCCAACAAGAGGCAA
LOC_Os11g07450
Os.33152.1.S1_x_at--739--2851Chr11:3750920..3750944 (25 bp)
AAGTGCCATAGGCTCTGGTTTCTCA
LOC_Os11g07450
Target Sequence 
TCAAGATGATCTCTCAGCGCCATATCTCTAGTGTTCCTGACACAGTACATGGAGGCAATCAATACGAGAAAGATATTACA
GAAAGATGTATACAGCAATCAGGCAAAGCATTGCAAGCTATAATCTCAGAGTGGATAGTGAAGTTTGACAATAAGGAGCT
TGATCGCTCAAGGCTGCAGCTGAACCATGTTGATGCAATTACTTCTAGGACATACGTCTGCAACCAATGCTACAGCAAGT
TCATCGATTTCCTGCTCTACTGGTTCCGTGTATCAATGCCAAGAAATCTCCNTCCACCTGATGCTGCTAACAGGGAGAGC
TGCTGGTATGGTTTCATGTGCCGAACCCAGCACCACCGGCCTGACCATGCTAAGAAGCTCAACCATGTCTGTCGTCCAAC
AAGAGGCAACCCCTAGCCTGCCTCGTTCTCTGAAAAAAATCATCTATTTTCAGTGTTCAACAGCAGCATTGTACAGCAAA
GAGCAAGTGCCATAGGCTCTGGTTTCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33152.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis