Browse Element(s) Details


OsAffx.30861.1.S1_at

Description tigr:9639.m00679
TID=OsAffx.30861.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0741011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g07360OsAffx.18723.1.S1_at11/1111+3703861..3705546hypothetical protein
LOC_Os11g07370OsAffx.18724.1.S1_at11/1111+3707085..3708963hypothetical protein
LOC_Os11g07380OsAffx.18725.1.S1_at11/1111+3710749..3712469hypothetical protein
LOC_Os11g07390OsAffx.30860.1.S1_at11/1111+3714694..3715340hypothetical protein
LOC_Os11g07390Os.56305.1.S1_at1/1111+3714694..3715340hypothetical protein
LOC_Os11g07400Os.56305.1.S1_at11/1111+3717816..3719505expressed protein
LOC_Os11g07410OsAffx.30861.1.S1_at11/1111+3728371..3728615hypothetical protein
LOC_Os11g07420OsAffx.30862.1.S1_at11/1111+3729946..3731097hypothetical protein
LOC_Os11g07430Os.53470.1.S1_at11/1111+3733025..3734936expressed protein
LOC_Os11g07440Os.47344.1.A1_at11/1111+3735532..3739424Neutral/alkaline invertase, putative, expressed
LOC_Os11g07450Os.51933.1.S1_at11/1111+3745176..3751094Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g07450Os.33152.1.S1_x_at11/1111+3745176..3751094Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30861.1.S1_at--897--8511Chr11:3728561..3728585 (25 bp)
TGGAAGACATTGATAGCCACAATCT
LOC_Os11g07410
OsAffx.30861.1.S1_at--903--5671Chr11:3728556..3728580 (25 bp)
GACATTGATAGCCACAATCTCCGGC
LOC_Os11g07410
OsAffx.30861.1.S1_at--1109--31Chr11:3728553..3728577 (25 bp)
ATTGATAGCCACAATCTCCGGCGAC
LOC_Os11g07410
OsAffx.30861.1.S1_at--209--531Chr11:3728528..3728552 (25 bp)
ATCGACGGCAACTGCTCTTCATCCG
LOC_Os11g07410
OsAffx.30861.1.S1_at--892--2551Chr11:3728519..3728543 (25 bp)
AACTGCTCTTCATCCGTGTCATGGG
LOC_Os11g07410
OsAffx.30861.1.S1_at--744--9091Chr11:3728516..3728540 (25 bp)
TGCTCTTCATCCGTGTCATGGGCGA
LOC_Os11g07410
OsAffx.30861.1.S1_at--273--9551Chr11:3728513..3728537 (25 bp)
TCTTCATCCGTGTCATGGGCGACGG
LOC_Os11g07410
OsAffx.30861.1.S1_at--1136--791Chr11:3728499..3728523 (25 bp)
ATGGGCGACGGCAGCCCAAGCTGCA
LOC_Os11g07410
OsAffx.30861.1.S1_at--453--3411Chr11:3728411..3728435 (25 bp)
CAGAAGTTGCTAGAAATGACGGATC
LOC_Os11g07410
OsAffx.30861.1.S1_at--674--6671Chr11:3728406..3728430 (25 bp)
GTTGCTAGAAATGACGGATCTCTTG
LOC_Os11g07410
OsAffx.30861.1.S1_at--175--10031Chr11:3728401..3728425 (25 bp)
TAGAAATGACGGATCTCTTGTCAAA
LOC_Os11g07410
Target Sequence 
TGGAAGACATTGATAGCCACAATCTCCGGCGACATCGACGGCAACTGCTCTTCATCCGTGTCATGGGCGACGGCAGCCCA
AGCTGCAGAAGTTGCTAGAAATGACGGATCTCTTGTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30861.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis