Browse Element(s) Details


OsAffx.18720.1.S1_at

Description tigr:9639.m00667
TID=OsAffx.18720.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0729010/11expressed protein
LOC_Os10g415103/11Calcineurin B-like protein 9, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g07250Os.27854.1.S1_at1/1111+3645478..3648693Leucine Rich Repeat family protein, expressed
LOC_Os11g07260OsAffx.18719.2.S1_at11/1111+3653727..3657157Leucine Rich Repeat family protein, expressed
LOC_Os11g07270OsAffx.18719.1.S1_at11/1111+3660514..3663672Leucine Rich Repeat family protein, expressed
LOC_Os11g07280Os.11596.1.S1_at11/1111+3663973..3669404Adaptin N terminal region family protein, expressed
LOC_Os11g07280Os.11596.1.S2_at11/1111+3663973..3669404Adaptin N terminal region family protein, expressed
LOC_Os11g07290OsAffx.18720.1.S1_at10/1111+3670970..3673200expressed protein
LOC_Os11g07290Os.53293.1.S1_at1/1111+3670970..3673200expressed protein
LOC_Os11g07300NANA11+3676903..3677767retrotransposon protein, putative, LINE subclass
LOC_Os11g07310OsAffx.7034.1.S1_at11/1111+3678455..3679068hypothetical protein
LOC_Os11g07320OsAffx.18721.1.S1_at11/1111+3681740..3683554hypothetical protein
LOC_Os11g07330OsAffx.30859.1.S1_at11/1111+3685238..3686956hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005513biological_processdetection of calcium ion
GO:0006950biological_processresponse to stress
GO:0006970biological_processresponse to osmotic stress
GO:0009738biological_processabscisic acid mediated signaling
GO:0019722biological_processcalcium-mediated signaling
GO:0005886cellular_componentplasma membrane
GO:0008287cellular_componentprotein serine/threonine phosphatase complex
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18720.1.S1_at--312--9951Chr11:3671003..3671027 (25 bp)
TACGCCGACTCTGGCAAGTGGCAAA
LOC_Os11g07290
OsAffx.18720.1.S1_at--971--5711Chr11:3671009..3671033 (25 bp)
GACTCTGGCAAGTGGCAAACTGGCA
LOC_Os11g07290
OsAffx.18720.1.S1_at--617--5691Chr11:3671045..3671069 (25 bp)
GACTTCTTCTTCCATGTCGCAGTCA
LOC_Os11g07290
OsAffx.18720.1.S1_at--1012--9551Chr11:3671049..3671073 (25 bp)
TCTTCTTCCATGTCGCAGTCATCCA
LOC_Os11g07290
OsAffx.18720.1.S1_at--662--771Chr11:3671058..3671082 (25 bp)
ATGTCGCAGTCATCCATGGAGCTCG
LOC_Os11g07290
OsAffx.18720.1.S1_at--1037--831NONE
ATGGAGCTCGCGTTAGCGTTAGTGA
NONE
OsAffx.18720.1.S1_at--1020--7512Chr11:3672420..3672444 (25 bp)
GTGGAGGCTTTGTTCGAGCTGTTCA
LOC_Os11g07290
OsAffx.18720.1.S1_at--490--6212Chr11:3672423..3672447 (25 bp)
GAGGCTTTGTTCGAGCTGTTCAAGA
LOC_Os11g07290
OsAffx.18720.1.S1_at--98--4892Chr11:3672426..3672450 (25 bp)
GCTTTGTTCGAGCTGTTCAAGAGCA
LOC_Os11g07290
OsAffx.18720.1.S1_at--29--6711Chr11:3672431..3672455 (25 bp)
GTTCGAGCTGTTCAAGAGCATTAAT
LOC_Os11g07290
OsAffx.18720.1.S1_at--423--5931Chr11:3672446..3672470 (25 bp)
GAGCATTAATGGTTCTGTGATCGAC
LOC_Os11g07290
Target Sequence 
TACGCCGACTCTGGCAAGTGGCAAACTGGCAACCCCTGCCTCGACTTCTTCTTCCATGTCGCAGTCATCCATGGAGCTCG
CGTTAGCGTTAGTGAGGTGGAGGCTTTGTTCGAGCTGTTCAAGAGCATTAATGGTTCTGTGATCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18720.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis