Browse Element(s) Details


Os.11596.1.S1_at

Description gb:AK072825.1
DB_XREF= gi:32982848
TID=Os.11596.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11596 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023136B14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023136B14, full insert sequence.
FL= gb:AK072825.1 gb:AK061958.1 gb:AK120713.1 gb:AK069716.1 gb:AK120719.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0728011/11Adaptin N terminal region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g07240OsAffx.30858.1.S1_at11/1111+3636770..3639905Leucine Rich Repeat family protein
LOC_Os11g07250Os.27854.1.S1_at1/1111+3645478..3648693Leucine Rich Repeat family protein, expressed
LOC_Os11g07260OsAffx.18719.2.S1_at11/1111+3653727..3657157Leucine Rich Repeat family protein, expressed
LOC_Os11g07270OsAffx.18719.1.S1_at11/1111+3660514..3663672Leucine Rich Repeat family protein, expressed
LOC_Os11g07280Os.11596.1.S1_at11/1111+3663973..3669404Adaptin N terminal region family protein, expressed
LOC_Os11g07280Os.11596.1.S2_at11/1111+3663973..3669404Adaptin N terminal region family protein, expressed
LOC_Os11g07290OsAffx.18720.1.S1_at10/1111+3670970..3673200expressed protein
LOC_Os11g07290Os.53293.1.S1_at1/1111+3670970..3673200expressed protein
LOC_Os11g07300NANA11+3676903..3677767retrotransposon protein, putative, LINE subclass
LOC_Os11g07310OsAffx.7034.1.S1_at11/1111+3678455..3679068hypothetical protein
LOC_Os11g07320OsAffx.18721.1.S1_at11/1111+3681740..3683554hypothetical protein
LOC_Os11g07330OsAffx.30859.1.S1_at11/1111+3685238..3686956hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0030276molecular_functionclathrin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11596.1.S1_at--160--6531Chr11:3668220..3668244 (25 bp)
GATTTGGTGCTTGATCTGCTTACCC
LOC_Os11g07280
Os.11596.1.S1_at--657--10251Chr11:3667980..3668004 (25 bp)
TTTGTGCGCGAGATCATTGAGACCA
LOC_Os11g07280
Os.11596.1.S1_at--848--1791Chr11:3667955..3667979 (25 bp)
ACCCCAAGCTCCGTGTGTCAATGAT
LOC_Os11g07280
Os.11596.1.S1_at--1056--8711Chr11:3667888..3667912 (25 bp)
TGTCTGCTCATGTGCTCTCTGGATC
LOC_Os11g07280
Os.11596.1.S1_at--242--1171Chr11:3667856..3667880 (25 bp)
AGTACTCCCTTTCACTATCTGAGGT
LOC_Os11g07280
Os.11596.1.S1_at--1003--6151Chr11:3667836..3667860 (25 bp)
GAGGTTGAGAGTGCCATTTCCACCA
LOC_Os11g07280
Os.11596.1.S1_at--115--211Chr11:3667821..3667845 (25 bp)
ATTTCCACCATCAAGCAGTGCCTTG
LOC_Os11g07280
Os.11596.1.S1_at--1032--1131Chr11:3667805..3667829 (25 bp)
AGTGCCTTGGTGATCTGCCATTCTA
LOC_Os11g07280
Os.11596.1.S1_at--1142--4431Chr11:3667789..3667813 (25 bp)
GCCATTCTACACTGTCTCTGAGGAA
LOC_Os11g07280
Os.11596.1.S1_at--126--2571Chr11:3667756..3667780 (25 bp)
AACTGATGCGTCAAAGCCAGCCCAG
LOC_Os11g07280
Os.11596.1.S1_at--450--8731Chr11:3667717..3667741 (25 bp)
TGTCACAGTATCTTCTAGGAGGCCT
LOC_Os11g07280
Target Sequence 
GATTTGGTGCTTGATCTGCTTACCCCCCGAAATGTGGAGGAGGTGGTGATGTACCTCAAGAAGGAGGTTGTTAAGACACA
GGCCGGGGATCTCGAGAAGGGTGGTGAGTACCGGCNGATGCTGGTGCAGGCGATCCATTCCTGCGCTGTCGAGTACCCAG
AGGTGGCTGGATCGGTGGTCCACCTCCTCATGGACTTCCTTGGTGACACTAATGTTGCTGCAGCGGTTGATGTTGTTTTG
TTTGTGCGCGAGATCATTGAGACCAACCCCAAGCTCCGTGTGTCAATGATTCAGAGGCTGATTGATACATTTTATCAGAT
CCGTGCATCCCGTGTCTGCTCATGTGCTCTCTGGATCCTTGGGGAGTACTCCCTTTCACTATCTGAGGTTGAGAGTGCCA
TTTCCACCATCAAGCAGTGCCTTGGTGATCTGCCATTCTACACTGTCTCTGAGGAAGGAGAATCAACTGATGCGTCAAAG
CCAGCCCAGCCTGTGGTGAACTCTGTCACAGTATCTTCTAGGAGGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11596.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis