Browse Element(s) Details


Os.11596.1.S2_at

Description gb:AK069716.1
DB_XREF= gi:32979740
TID=Os.11596.1
CNT=16
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.11596 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023136B14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023030F21, full insert sequence.
FL= gb:AK072825.1 gb:AK061958.1 gb:AK120713.1 gb:AK069716.1 gb:AK120719.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0728011/11Adaptin N terminal region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g07240OsAffx.30858.1.S1_at11/1111+3636770..3639905Leucine Rich Repeat family protein
LOC_Os11g07250Os.27854.1.S1_at1/1111+3645478..3648693Leucine Rich Repeat family protein, expressed
LOC_Os11g07260OsAffx.18719.2.S1_at11/1111+3653727..3657157Leucine Rich Repeat family protein, expressed
LOC_Os11g07270OsAffx.18719.1.S1_at11/1111+3660514..3663672Leucine Rich Repeat family protein, expressed
LOC_Os11g07280Os.11596.1.S1_at11/1111+3663973..3669404Adaptin N terminal region family protein, expressed
LOC_Os11g07280Os.11596.1.S2_at11/1111+3663973..3669404Adaptin N terminal region family protein, expressed
LOC_Os11g07290OsAffx.18720.1.S1_at10/1111+3670970..3673200expressed protein
LOC_Os11g07290Os.53293.1.S1_at1/1111+3670970..3673200expressed protein
LOC_Os11g07300NANA11+3676903..3677767retrotransposon protein, putative, LINE subclass
LOC_Os11g07310OsAffx.7034.1.S1_at11/1111+3678455..3679068hypothetical protein
LOC_Os11g07320OsAffx.18721.1.S1_at11/1111+3681740..3683554hypothetical protein
LOC_Os11g07330OsAffx.30859.1.S1_at11/1111+3685238..3686956hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0030276molecular_functionclathrin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11596.1.S2_at--1125--5951Chr11:3664544..3664568 (25 bp)
GAGAATGTGGGTTTATCGCTGCTAA
LOC_Os11g07280
Os.11596.1.S2_at--768--531Chr11:3664530..3664554 (25 bp)
ATCGCTGCTAATCTCTATGCCAAGA
LOC_Os11g07280
Os.11596.1.S2_at--309--2911Chr11:3664412..3664436 (25 bp)
AAGGAATCGCCCTCAGCTTAGGCGA
LOC_Os11g07280
Os.11596.1.S2_at--1057--2931Chr11:3664307..3664331 (25 bp)
AAGGCCCATCCGAACTCAATTTTTG
LOC_Os11g07280
Os.11596.1.S2_at--898--10391Chr11:3664287..3664311 (25 bp)
TTTTGCTACTCCCAATTTTCATGAG
LOC_Os11g07280
Os.11596.1.S2_at--392--2431Chr11:3664164..3664188 (25 bp)
AAAACCGTGATATGTGCTCCCAGAT
LOC_Os11g07280
Os.11596.1.S2_at--591--7311Chr11:3664151..3664175 (25 bp)
GTGCTCCCAGATGTTTTATGATACT
LOC_Os11g07280
Os.11596.1.S2_at--146--6491Chr11:3664132..3664156 (25 bp)
GATACTGTCTATTCTTTGCTCACCT
LOC_Os11g07280
Os.11596.1.S2_at--506--5991Chr11:3664094..3664118 (25 bp)
GAGACTTCGACTTCAATCCTGGTGT
LOC_Os11g07280
Os.11596.1.S2_at--538--10731Chr11:3664070..3664094 (25 bp)
TTGATCTTTCTTGATGTCCCCTAAA
LOC_Os11g07280
Os.11596.1.S2_at--299--8711Chr11:3664056..3664080 (25 bp)
TGTCCCCTAAATGCCATGTACCTGA
LOC_Os11g07280
Target Sequence 
GAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAAGAGTGTTTTTGGTGAGGATGCATTGGTGAACATCAGCGTTGAA
AAGCAAGCCGATGGCAAGCTGAGNGGCTATATCAGAATACGGAGTAAGACCCAAGGAATCGCCCTCAGCTTAGGCGACAA
GATCACCCTCAAACAGAAGGGAGGCAGCAGTTAACTGAGCTGTGACGAAGACGTCACACGTATATCAAATTATTACAAAG
GCCCATCCGAACTCAATTTTTGCTACTCCCAATTTTCATGAGTTGTCAGTTGTTGTCAATTTGTTTGAGTTGGAATGACA
GGCAGTAGAGATTATCCTACATGAACATCATTGTGTAGCCTTGTATTGTTTTTAGCTTACAAAACCGTGATATGTGCTCC
CAGATGTTTTATGATACTGTCTATTCTTTGCTCACCTTTGTACTCCCCCTGAGACTTCGACTTCAATCCTGGTGTTGATC
TTTCTTGATGTCCCCTAAATGCCATGTACCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11596.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis