Browse Element(s) Details


OsAffx.18719.1.S1_at

Description tigr:9639.m00665
TID=OsAffx.18719.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0727011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g07240OsAffx.30858.1.S1_at11/1111+3636770..3639905Leucine Rich Repeat family protein
LOC_Os11g07250Os.27854.1.S1_at1/1111+3645478..3648693Leucine Rich Repeat family protein, expressed
LOC_Os11g07260OsAffx.18719.2.S1_at11/1111+3653727..3657157Leucine Rich Repeat family protein, expressed
LOC_Os11g07270OsAffx.18719.1.S1_at11/1111+3660514..3663672Leucine Rich Repeat family protein, expressed
LOC_Os11g07280Os.11596.1.S1_at11/1111+3663973..3669404Adaptin N terminal region family protein, expressed
LOC_Os11g07280Os.11596.1.S2_at11/1111+3663973..3669404Adaptin N terminal region family protein, expressed
LOC_Os11g07290OsAffx.18720.1.S1_at10/1111+3670970..3673200expressed protein
LOC_Os11g07290Os.53293.1.S1_at1/1111+3670970..3673200expressed protein
LOC_Os11g07300NANA11+3676903..3677767retrotransposon protein, putative, LINE subclass
LOC_Os11g07310OsAffx.7034.1.S1_at11/1111+3678455..3679068hypothetical protein
LOC_Os11g07320OsAffx.18721.1.S1_at11/1111+3681740..3683554hypothetical protein
LOC_Os11g07330OsAffx.30859.1.S1_at11/1111+3685238..3686956hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18719.1.S1_at--694--2711Chr11:3662955..3662979 (25 bp)
AAGCATTGCAGTGGATGTGTCAGAT
LOC_Os11g07270
OsAffx.18719.1.S1_at--1092--4951Chr11:3662994..3663018 (25 bp)
GCATCATAACCACCAAGGAACCATT
LOC_Os11g07270
OsAffx.18719.1.S1_at--438--1751Chr11:3663036..3663060 (25 bp)
ACCTAGCCACATCCTTCTAAATGAT
LOC_Os11g07270
OsAffx.18719.1.S1_at--604--7891Chr11:3663098..3663122 (25 bp)
GGTTCAAATCTGATTCTGCCACATC
LOC_Os11g07270
OsAffx.18719.1.S1_at--284--3291Chr11:3663137..3663161 (25 bp)
CAAATTCGACCTCTTCTATTGCAAT
LOC_Os11g07270
OsAffx.18719.1.S1_at--183--1451Chr11:3663389..3663413 (25 bp)
AGAAGCCGACGGATGACATGTTTAA
LOC_Os11g07270
OsAffx.18719.1.S1_at--749--3411Chr11:3663440..3663464 (25 bp)
CAGAGATCAACTTGCCTGAGATGTT
LOC_Os11g07270
OsAffx.18719.1.S1_at--1052--3471Chr11:3663490..3663514 (25 bp)
CAGGAGTTGCACATTTGGCACGAAA
LOC_Os11g07270
OsAffx.18719.1.S1_at--418--8091Chr11:3663506..3663530 (25 bp)
GGCACGAAACCCCAACGGATGTTGA
LOC_Os11g07270
OsAffx.18719.1.S1_at--1075--651Chr11:3663536..3663560 (25 bp)
ATGAAGTCAATTGCCTGCTTTCTGT
LOC_Os11g07270
OsAffx.18719.1.S1_at--153--9731Chr11:3663576..3663600 (25 bp)
TAATTGCACCAGGTTGGTCCCAAGC
LOC_Os11g07270
Target Sequence 
AAGCATTGCAGTGGATGTGTCAGATGCATTGGCATACTTGCATCATAACCACCAAGGAACCATTGTTCACAGTGATATAA
AACCTAGCCACATCCTTCTAAATGATGACATGACGGCTCATGTTGGAGACTTTGGACTAGCAAGGTTCAAATCTGATTCT
GCCACATCATCTTTTGTCAACTCAAATTCGACCTCTTCTATTGCAATAAAGGGAACTATAGGATATGTTGCTCCAGAATG
TGCTGAGGATGGTCAAGTTTCAACTGCCTCGGATGTTTACAGCTTCGGAATTGTTCTCCTCGAGATATTCATTCGAAAGA
AGCCGACGGATGACATGTTTAAGGACGGACTGAGCATTGTAAAGTATACAGAGATCAACTTGCCTGAGATGTTGCAGATT
GTTGATCCTCAGCTGCTGCAGGAGTTGCACATTTGGCACGAAACCCCAACGGATGTTGAGAAGAATGAAGTCAATTGCCT
GCTTTCTGTGCTAAATATTGGACTTAATTGCACCAGGTTGGTCCCAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18719.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis