Browse Element(s) Details


Os.27854.1.S1_at

Description gb:AK100219.1
DB_XREF= gi:32985428
TID=Os.27854.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27854 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023046E22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023046E22, full insert sequence.
FL= gb:AY374122.1 gb:AK100219.1 gb:AK069089.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0962011/11Sister-chromatide cohesion protein, putative, expressed
LOC_Os11g072501/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g09560OsAffx.14614.1.S1_at11/115+5380459..5382051hypothetical protein
LOC_Os05g09560Os.50120.1.S1_at1/115+5380459..5382051hypothetical protein
LOC_Os05g09560OsAffx.16028.1.S1_x_at1/115+5380459..5382051hypothetical protein
LOC_Os05g09570OsAffx.29789.3.S1_x_at11/115+5384844..5389267hAT family dimerisation domain containing protein
LOC_Os05g09570OsAffx.29789.1.S1_x_at6/115+5384844..5389267hAT family dimerisation domain containing protein
LOC_Os05g09570OsAffx.31885.2.S1_x_at2/115+5384844..5389267hAT family dimerisation domain containing protein
LOC_Os05g09580Os.6629.1.S1_at11/115+5394193..5395440expressed protein
LOC_Os05g09590OsAffx.18706.1.S1_at11/115+5396502..5397083hypothetical protein
LOC_Os05g09600Os.53133.1.S1_x_at11/115+5398730..5399338expressed protein
LOC_Os05g09600Os.53133.1.S1_at11/115+5398730..5399338expressed protein
LOC_Os05g09600OsAffx.14615.1.S1_at1/115+5398730..5399338expressed protein
LOC_Os05g09610OsAffx.4290.1.S1_at11/115+5402141..5402857hypothetical protein
LOC_Os05g09620Os.27854.1.S1_at11/115+5403694..5412411Sister-chromatide cohesion protein, putative, expressed
LOC_Os05g09620Os.27854.1.S2_at10/115+5403694..5412411Sister-chromatide cohesion protein, putative, expressed
LOC_Os05g09630Os.23760.2.S1_x_at11/115+5420780..5424285expressed protein
LOC_Os05g09630Os.23760.1.S1_at7/115+5420780..5424285expressed protein
LOC_Os05g09640OsAffx.14616.1.S1_at11/115+5426193..5427430Leucine Rich Repeat family protein, expressed
LOC_Os05g09650Os.49179.1.S1_at3/115+5429455..5431324Ubiquinone biosynthesis protein COQ4 homolog, putative, expressed
LOC_Os05g09660OsAffx.16862.1.S1_at2/115+5434886..5441004HAD superfamily phosphatase containing protein, expressed
LOC_Os05g09660OsAffx.29326.1.S1_at1/115+5434886..5441004HAD superfamily phosphatase containing protein, expressed
LOC_Os05g09660OsAffx.17706.1.S1_at1/115+5434886..5441004HAD superfamily phosphatase containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27854.1.S1_at--1132--5471Chr05:5406736..5406760 (25 bp)
GAACTTCTATTCTTGCCTTGCAAAG
LOC_Os05g09620
Os.27854.1.S1_at--766--2411Chr05:5406778..5406802 (25 bp)
AAAACATACCTTCTCTTGGTCTCTT
LOC_Os05g09620
Os.27854.1.S1_at--977--1611Chr05:5406860..5406884 (25 bp)
AGCTGTGTCAGCTATCGGACTCATC
LOC_Os05g09620
Os.27854.1.S1_at--835--5871Chr05:5407747..5407771 (25 bp)
GAGCGATGATGATTTAGGTCCACTA
LOC_Os05g09620
Os.27854.1.S1_at--749--10411Chr05:5407782..5407806 (25 bp)
TTATTGATGAGCCTCCGCTGATCAG
LOC_Os05g09620
Os.27854.1.S1_at--463--8211Chr05:5408032..5408056 (25 bp)
GGAATTTTCAGATGACCCAGTCCTG
LOC_Os05g09620
Os.27854.1.S1_at--775--3451Chr05:5408049..5408073 (25 bp)
CAGTCCTGAGCTCTTATGTCATTGA
LOC_Os05g09620
Os.27854.1.S1_at--363--2871Chr05:5408185..5408209 (25 bp)
AAGTGTATAATCTCCATGCTTCTGG
LOC_Os05g09620
Os.27854.1.S1_at--895--10491Chr05:5408221..5408245 (25 bp)
TTAACCGAGCTTACTGACATGGATG
LOC_Os05g09620
Os.27854.1.S1_at--841--2631Chr05:5408247..5408271 (25 bp)
AACCAATCTAGTTCGGATGCTGCGA
LOC_Os05g09620
Os.27854.1.S1_at--590--6332Chr11:3648424..3648479 (25 bp)
GATGCTGCGAGCCTCTGCAAAGAAG
LOC_Os11g07250
Target Sequence 
GAACTTCTATTCTTGCCTTGCAAAGCCTGTATGAAGTGGATGAAAACATACCTTCTCTTGGTCTCTTTACTGAGAGATTT
TACAGCAGGATGATCCAGCTTGCAGATGATGTTGATATTTCAGTAGCTGTGTCAGCTATCGGACTCATCAAGCAGTTACT
GAGGCATCAACTTTTGAGCGATGATGATTTAGGTCCACTATATGATTTGCTTATTGATGAGCCTCCGCTGATCAGGCGTG
CAATTGGGGAATTGGTTTATGATCATCTGATAGCACAAAACATCAAAACCTCCCAGTCTGGAGCAAGAGATGGAAACAAT
GATTCATCAGAGGTTCATATTGGTCGAATGCTGCAANTCCTGAGGGAATTTTCAGATGACCCAGTCCTGAGCTCTTATGT
CATTGATGATATTTGGGATGACATGAAGGCTATGAAAGATTGGAAGTGTATAATCTCCATGCTTCTGGATGAAAATCCAT
TAACCGAGCTTACTGACATGGATGGAACCAATCTAGTTCGGATGCTGCGAGCCTCTGCAAAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27854.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis