Browse Element(s) Details


Os.23760.1.S1_at

Description gb:AK111527.1
DB_XREF= gi:37988190
TID=Os.23760.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23760 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013157O10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013021F13, full insert sequence.
FL= gb:AK111527.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g096307/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g09590OsAffx.18706.1.S1_at11/115+5396502..5397083hypothetical protein
LOC_Os05g09600Os.53133.1.S1_x_at11/115+5398730..5399338expressed protein
LOC_Os05g09600Os.53133.1.S1_at11/115+5398730..5399338expressed protein
LOC_Os05g09600OsAffx.14615.1.S1_at1/115+5398730..5399338expressed protein
LOC_Os05g09610OsAffx.4290.1.S1_at11/115+5402141..5402857hypothetical protein
LOC_Os05g09620Os.27854.1.S1_at11/115+5403694..5412411Sister-chromatide cohesion protein, putative, expressed
LOC_Os05g09620Os.27854.1.S2_at10/115+5403694..5412411Sister-chromatide cohesion protein, putative, expressed
LOC_Os05g09630Os.23760.2.S1_x_at11/115+5420780..5424285expressed protein
LOC_Os05g09630Os.23760.1.S1_at7/115+5420780..5424285expressed protein
LOC_Os05g09640OsAffx.14616.1.S1_at11/115+5426193..5427430Leucine Rich Repeat family protein, expressed
LOC_Os05g09650Os.49179.1.S1_at3/115+5429455..5431324Ubiquinone biosynthesis protein COQ4 homolog, putative, expressed
LOC_Os05g09660OsAffx.16862.1.S1_at2/115+5434886..5441004HAD superfamily phosphatase containing protein, expressed
LOC_Os05g09660OsAffx.29326.1.S1_at1/115+5434886..5441004HAD superfamily phosphatase containing protein, expressed
LOC_Os05g09660OsAffx.17706.1.S1_at1/115+5434886..5441004HAD superfamily phosphatase containing protein, expressed
LOC_Os05g09670OsAffx.26805.1.S1_at11/115+5441685..5442425hypothetical protein
LOC_Os05g09680OsAffx.26806.1.S1_at11/115+5444670..5447995hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23760.1.S1_at--550--10151Chr05:5424037..5424061 (25 bp)
TATCTCCAGTGGTTCAGTAAGTCGA
LOC_Os05g09630
Os.23760.1.S1_at--450--6951Chr05:5424079..5424103 (25 bp)
GTAGAAAGACGCTGTGACACCAAGA
LOC_Os05g09630
Os.23760.1.S1_at--757--5511Chr05:5424141..5424165 (25 bp)
GAAAATCGTGAATCTTCCGGAGCAG
LOC_Os05g09630
Os.23760.1.S1_at--1142--2651Chr05:5424151..5424175 (25 bp)
AATCTTCCGGAGCAGTTTGTACTAA
LOC_Os05g09630
Os.23760.1.S1_at--257--4531Chr05:5424179..5424203 (25 bp)
GCCGCCCTGACTGATGACTGTTGTA
LOC_Os05g09630
Os.23760.1.S1_at--190--691Chr05:5424192..5424216 (25 bp)
ATGACTGTTGTATCCATCGATCGAA
LOC_Os05g09630
Os.23760.1.S1_at--1071--511Chr05:5424207..5424231 (25 bp)
ATCGATCGAATGCTGGACTTGTTTA
LOC_Os05g09630
Os.23760.1.S1_at--445--7771Chr05:5424281..5424305 (25 bp)
GGTGCAACAAATTCAAGTAGCTGGT
NONE
Os.23760.1.S1_at--313--10371Chr05:5424323..5424347 (25 bp)
TTTTTTCAGTATTCATAGACCTCAC
NONE
Os.23760.1.S1_at--737--291Chr05:5424337..5424361 (25 bp)
ATAGACCTCACTTGTTAGCTGTCGC
NONE
Os.23760.1.S1_at--733--9991Chr05:5424352..5424376 (25 bp)
TAGCTGTCGCTATATGCTAAGGACA
NONE
Target Sequence 
TATCTCCAGTGGTTCAGTAAGTCGANCTTTTCTTTGCANTGCGTAGAAAGACGCTGTGACACCAAGAAAGTACAAGAAGT
AAAAAGAAGTTTAATNTAGGATCAGAAAATCGTGAATCTTCCGGAGCAGTTTGTACTAAGNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNTCGCCGCCCTGACTGATGACTGTTGTATCCATCGATCGAATGCTGGACTTGTTTAGGATGAAGTACATCC
TAATTTACAAAATTATGTTATTCTGCTTANNNNAGGTGCAACAAATTCAAGTAGCTGGTGTTGACCATGAGATTTTTTTT
TTCAGTATTCATAGACCTCACTTGTTAGCTGTCGCTATATGCTAAGGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23760.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis