Browse Element(s) Details


OsAffx.17706.1.S1_at

Description tigr:9637.m01227
TID=OsAffx.17706.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1507011/11hypothetical protein
LOC_Os05g096601/11HAD superfamily phosphatase containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15050Os.49322.1.S1_at11/119+9095554..9100313Ent-kaurene synthase A, chloroplast precursor, putative, expressed
LOC_Os09g15060OsAffx.16998.1.S1_at11/119+9104916..9110419hypothetical protein
LOC_Os09g15060OsAffx.8934.1.S1_x_at1/119+9104916..9110419hypothetical protein
LOC_Os09g15070OsAffx.17706.1.S1_at11/119+9119450..9121145hypothetical protein
LOC_Os09g15080Os.27088.1.A1_x_at2/119+9126292..9129130retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g15080OsAffx.21673.1.S1_x_at1/119+9126292..9129130retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g15080Os.46012.2.S1_x_at1/119+9126292..9129130retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g15090NANA9+9145532..9150235transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0003993molecular_functionacid phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17706.1.S1_at--745--7631Chr09:9121080..9121104 (25 bp)
GGGAGATTGTTTAATAGTCCTACAT
LOC_Os09g15070
OsAffx.17706.1.S1_at--71--8231Chr09:9120386..9120409 (24 bp)
GGCAACAGGTGTGAATGGTAACTCT
LOC_Os09g15070
OsAffx.17706.1.S1_at--126--5291Chr09:9120374..9120398 (25 bp)
GAATGGTAACTCTGATCCTGGGAAT
LOC_Os09g15070
OsAffx.17706.1.S1_at--134--6291Chr09:9120340..9120364 (25 bp)
GATGTTGATGACTTGGGTGATGATA
LOC_Os09g15070
OsAffx.17706.1.S1_at--1--6679Chr11:9211556..9211576 (21 bp)
GTTGAATATGTGTACGTAGTCGGTT
NONE
OsAffx.17706.1.S1_at--64--8991Chr09:9119615..9119639 (25 bp)
TGAACTGATGACTCTCATGGATCTT
LOC_Os09g15070
OsAffx.17706.1.S1_at--727--5711Chr09:9119606..9119630 (25 bp)
GACTCTCATGGATCTTGACCTCAAA
LOC_Os09g15070
OsAffx.17706.1.S1_at--191--4551Chr09:9119560..9119584 (25 bp)
GCCCAGGCAGGAAAAGAACAGAAGT
LOC_Os09g15070
OsAffx.17706.1.S1_at--1042--2131Chr09:9119543..9119567 (25 bp)
ACAGAAGTGCGGTATTCCCACTGAC
LOC_Os09g15070
OsAffx.17706.1.S1_at--633--10651Chr09:9119529..9119553 (25 bp)
TTCCCACTGACTCTGACATCGAGAA
LOC_Os09g15070
OsAffx.17706.1.S1_at--336--2131Chr09:9119483..9119507 (25 bp)
ACACGTTAGTGTGCTAGAAAGGACA
LOC_Os09g15070
Target Sequence 
GGGAGATTGTTTAATAGTCCTACATTGGTTAAGGAAGGCAACAGGTGTGAATGGTAACTCTGATCCTGGGAATGGGGATG
ATGATGTTGATGACTTGGGTGATGATAAGAAGGATGATAAGCAAAAGGATAAGAAGGGGGATGATAGCGCAGGGGTTGCT
AGAGTTTGTGTTGAATATGTGTACGTAGTCGGTTACAGTTTAGGACTTGGAGTTGTAATAGGTATTAGGACTAGAGAGTC
TGATTATAAAGAGGGTGAACTGATGACTCTCATGGATCTTGACCTCAAACATGGGGAGATGGAGGTGGGAGCCCAGGCAG
GAAAAGAACAGAAGTGCGGTATTCCCACTGACTCTGACATCGAGAATATGAGATCAGAGGAAGATAAACACGTTAGTGTG
CTAGAAAGGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17706.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis