Browse Element(s) Details


Os.49322.1.S1_at

Description gb:AK066759.1
DB_XREF= gi:32976777
TID=Os.49322.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49322 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013077H13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013077H13, full insert sequence.
FL= gb:AK066759.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1505011/11Ent-kaurene synthase A, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15040OsAffx.6279.1.S1_at10/119+9072687..9074129hypothetical protein
LOC_Os09g15050Os.49322.1.S1_at11/119+9095554..9100313Ent-kaurene synthase A, chloroplast precursor, putative, expressed
LOC_Os09g15060OsAffx.16998.1.S1_at11/119+9104916..9110419hypothetical protein
LOC_Os09g15060OsAffx.8934.1.S1_x_at1/119+9104916..9110419hypothetical protein
LOC_Os09g15070OsAffx.17706.1.S1_at11/119+9119450..9121145hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009686biological_processgibberellic acid biosynthesis
GO:0009740biological_processgibberellic acid mediated signaling
GO:0009507cellular_componentchloroplast
GO:0009536cellular_componentplastid
GO:0009899molecular_functionent-kaurene synthase activity
GO:0009905molecular_functionent-copalyl diphosphate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49322.1.S1_at--542--10851Chr09:9099702..9099726 (25 bp)
TTGGTTTTGAGATCACCTTCCCCTC
LOC_Os09g15050
Os.49322.1.S1_at--86--3651Chr09:9099718..9099742 (25 bp)
CTTCCCCTCACTTTTAGAGATAGCC
LOC_Os09g15050
Os.49322.1.S1_at--779--10751Chr09:9099756..9099780 (25 bp)
TTGACATCCCTTATGATGACCCTGC
LOC_Os09g15050
Os.49322.1.S1_at--991--5811Chr09:9099773..9099797 (25 bp)
GACCCTGCTTTGCACAAGATATATG
LOC_Os09g15050
Os.49322.1.S1_at--1019--2771Chr09:9099927..9099951 (25 bp)
AAGAGAAATACTTCACTCCCTACCA
LOC_Os09g15050
Os.49322.1.S1_at--893--2791Chr09:9099997..9100021 (25 bp)
AAGAGGCTCCTCAAGCTCCAACTTT
LOC_Os09g15050
Os.49322.1.S1_at--982--4351Chr09:9100014..9100038 (25 bp)
CCAACTTTCAGATGGATCCTTCCTA
LOC_Os09g15050
Os.49322.1.S1_at--710--4131Chr09:9100047..9100071 (25 bp)
CGCTGCAACGGCCTATGTTTTGATG
LOC_Os09g15050
Os.49322.1.S1_at--1043--5571Chr09:9100086..9100110 (25 bp)
GAAATGTCTCGAGTTCCTTGATGGA
LOC_Os09g15050
Os.49322.1.S1_at--552--5131Chr09:9100216..9100240 (25 bp)
GCAAAGTTCGTTTCTGTACAGTTCC
LOC_Os09g15050
Os.49322.1.S1_at--104--3051Chr09:9100288..9100311 (24 bp)
AATCGGATTTGTCCAGATATGCATC
LOC_Os09g15050
Target Sequence 
TTGGTTTTGAGATCACCTTCCCCTCACTTTTAGAGATAGCCAAGGACTTGGCTCTTGACATCCCTTATGATGACCCTGCT
TTGCACAAGATATATGCCCAAAGGGAGCTAAAGCTTAAGAAGATCCCAAGAGAAATACTTCACTCCCTACCAACAAGTTT
GCTTCTTAGCATAGAGGGACTGCGAGGCTTGGACTGGAAGAGGCTCCTCAAGCTCCAACTTTCAGATGGATCCTTCCTAT
CCTCACCCGCTGCAACGGCCTATGTTTTGATGCAAACGGGCGACAAGAAATGTCTCGAGTTCCTTGATGGAATTGTTAGC
AAATTCCATGGGGGAGGTAAATAATGATCTTTCAATTATAAATAAATTCTCATTCGAGACTTCATTTAATTTCTAGTTGA
ATAGAACCTATTTGATGCAAAGTTCGTTTCTGTACAGTTCCAGAATTGAAAAAAATGGATATCATTTTTGATAGCCGTAA
CATTATTCAATCGGATTTGTCCAGATATGCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49322.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis