Browse Element(s) Details


OsAffx.21673.1.S1_x_at

Description gb:NM_190976.1
DB_XREF= gi:34909035
GEN=P0034E02.30
TID=OsAffx.21673.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0034E02.30 (P0034E02.30), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g046602/11hypothetical protein
LOC_Os09g150801/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04610Os.46460.1.S1_at11/1110+2180707..2183115F-box domain containing protein, expressed
LOC_Os10g04610Os.46313.2.S1_x_at1/1110+2180707..2183115F-box domain containing protein, expressed
LOC_Os10g04620Os.52409.1.S1_s_at11/1110+2185660..2190883hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os10g04620Os.52409.1.S1_at6/1110+2185660..2190883hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os10g04630NANA10+2196166..2197055expressed protein
LOC_Os10g04640OsAffx.20761.1.S1_at11/1110+2199524..2203866retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g04660OsAffx.30279.1.A1_at11/1110+2204917..2209015hypothetical protein
LOC_Os10g04660OsAffx.6575.1.S1_at11/1110+2204917..2209015hypothetical protein
LOC_Os10g04660OsAffx.21673.1.S1_x_at2/1110+2204917..2209015hypothetical protein
LOC_Os10g04674Os.46731.1.S1_at11/1110+2210559..2215549NB-ARC domain containing protein, expressed
LOC_Os10g04674Os.46731.1.S1_x_at11/1110+2210559..2215549NB-ARC domain containing protein, expressed
LOC_Os10g04674Os.46731.2.S1_at11/1110+2210559..2215549NB-ARC domain containing protein, expressed
LOC_Os10g04690Os.46873.1.S1_a_at2/1110+2223366..2224991hypothetical protein
LOC_Os10g04700Os.46873.1.S1_a_at11/1110+2227150..2230121F-box domain containing protein, expressed
LOC_Os10g04710OsAffx.18134.1.S1_at11/1110+2232038..2232672hypothetical protein
LOC_Os10g04720Os.23264.1.A1_at10/1110+2233528..2236379Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21673.1.S1_x_at--102--9631Chr01:34456775..34457119 (25 bp)
TCATGTGGCCGCCAGCGAGAATACG
NONE
OsAffx.21673.1.S1_x_at--75--7551Chr01:34456779..34457123 (25 bp)
GTGGCCGCCAGCGAGAATACGCCAT
NONE
OsAffx.21673.1.S1_x_at--268--4531Chr01:34456782..34457126 (25 bp)
GCCGCCAGCGAGAATACGCCATCGG
NONE
OsAffx.21673.1.S1_x_at--863--5959Chr11:861387..861410 (24 bp)
GAGAATACGCCATCGGAGCACGAAT
NONE
OsAffx.21673.1.S1_x_at--242--5937Chr11:861401..861425 (25 bp)
GAGCACGAATTTCCTTCGTTCCGTG
NONE
OsAffx.21673.1.S1_x_at--441--10612Chr06:17981513..17981537 (25 bp)
TTCCGTCCATAGCTCCGTCGTCTTC
NONE
OsAffx.21673.1.S1_x_at--827--4572Chr06:17981639..17981663 (25 bp)
GCGCGGAGGGAAGGAGTCCGCCACC
NONE
OsAffx.21673.1.S1_x_at--576--4152Chr06:17981669..17981693 (25 bp)
CGCCGGCGTCAGTCGTCGGCATCGT
NONE
OsAffx.21673.1.S1_x_at--239--9275Chr08:14455485..14455769 (25 bp)
TCCTCCGGCTGGAGCATGCCGGCGA
NONE
OsAffx.21673.1.S1_x_at--341--1531Chr01:34457470..34457494 (25 bp)
AGCATGCCGGCGAGGGTGCCCTGTC
NONE
OsAffx.21673.1.S1_x_at--154--3611Chr01:34457541..34457565 (25 bp)
CATTGTACACAGCTGCCGCATTCCG
NONE
Target Sequence 
TCATGTGGCCGCCAGCGAGAATACGCCATCGGAGCACGAATTTCCTTCGTTCCGTGCCACTCCGTCTCTTCCGTCCATAG
CTCCGTCGTCTTCTCCGCCCGGCGCCGTTCGCCGCCGGTGCCCGTGTCAGCCGCGCCGGCGTCCGTCCATCACCGGCATC
GTCCATCCTCGTCGGCGTCCGTCGTCGTCATCGTCGTCCACGGCTCGGTGGGCGCGGAGGGAAGGAGTCCGCCACCGCCC
GCGCCGGCGTCAGTCGTCGGCATCGTCGTTGTCCACCGCCCGCGCCGCGCGCGCCCGTGTCAGCCACGGCGTTGTCCGTT
CGCCGTCACCGCCATCGTCGTCCTCCACCGCCCGCGCATCGCGTCCTCCGGCTGGAGCATGCCGGCGAGGGTGCCCTGTC
CTCGTCCTCCTCATCTTCCTCCCCACCACCACGGACGCCGCCCCCCCATTGTACACAGCTGCCGCATTCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21673.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis