Browse Element(s) Details


OsAffx.30279.1.A1_at

Description tigr:9638.m00375
TID=OsAffx.30279.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0466011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04610Os.46460.1.S1_at11/1110+2180707..2183115F-box domain containing protein, expressed
LOC_Os10g04610Os.46313.2.S1_x_at1/1110+2180707..2183115F-box domain containing protein, expressed
LOC_Os10g04620Os.52409.1.S1_s_at11/1110+2185660..2190883hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os10g04620Os.52409.1.S1_at6/1110+2185660..2190883hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os10g04630NANA10+2196166..2197055expressed protein
LOC_Os10g04640OsAffx.20761.1.S1_at11/1110+2199524..2203866retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g04660OsAffx.30279.1.A1_at11/1110+2204917..2209015hypothetical protein
LOC_Os10g04660OsAffx.6575.1.S1_at11/1110+2204917..2209015hypothetical protein
LOC_Os10g04660OsAffx.21673.1.S1_x_at2/1110+2204917..2209015hypothetical protein
LOC_Os10g04674Os.46731.1.S1_at11/1110+2210559..2215549NB-ARC domain containing protein, expressed
LOC_Os10g04674Os.46731.1.S1_x_at11/1110+2210559..2215549NB-ARC domain containing protein, expressed
LOC_Os10g04674Os.46731.2.S1_at11/1110+2210559..2215549NB-ARC domain containing protein, expressed
LOC_Os10g04690Os.46873.1.S1_a_at2/1110+2223366..2224991hypothetical protein
LOC_Os10g04700Os.46873.1.S1_a_at11/1110+2227150..2230121F-box domain containing protein, expressed
LOC_Os10g04710OsAffx.18134.1.S1_at11/1110+2232038..2232672hypothetical protein
LOC_Os10g04720Os.23264.1.A1_at10/1110+2233528..2236379Protein kinase domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30279.1.A1_at--1006--7771Chr10:2205146..2205170 (25 bp)
GGAACCGGCCGCACGGGCTGGCGAA
LOC_Os10g04660
OsAffx.30279.1.A1_at--599--4711Chr10:2205162..2205186 (25 bp)
GCTGGCGAAGTGTCCGATGAGTCCG
LOC_Os10g04660
OsAffx.30279.1.A1_at--11--1731Chr10:2205319..2205343 (25 bp)
ACCAGCATCTCGTCCGGGAGAGCGG
LOC_Os10g04660
OsAffx.30279.1.A1_at--209--3531Chr10:2205363..2205387 (25 bp)
CATCCTGCCGCCGTGGGAAGTGGTC
LOC_Os10g04660
OsAffx.30279.1.A1_at--512--5291Chr10:2205400..2205424 (25 bp)
GAATGGATTGTTTCACTTAGGTGGA
LOC_Os10g04660
OsAffx.30279.1.A1_at--977--9651Chr10:2205412..2205436 (25 bp)
TCACTTAGGTGGAGAGGAGAATTTT
LOC_Os10g04660
OsAffx.30279.1.A1_at--473--5231Chr10:2205439..2205463 (25 bp)
GAATATGCCATCAAATTCGCACTAC
LOC_Os10g04660
OsAffx.30279.1.A1_at--124--2032Chr11:21426068..21426087 (20 bp)
ACTACTTTCAGGATATACCACCCAA
NONE
OsAffx.30279.1.A1_at--928--9611Chr10:2205466..2205490 (25 bp)
TCAGGATATACCACCCAATTCGTAC
LOC_Os10g04660
OsAffx.30279.1.A1_at--169--10172Chr10:2205472..2205496 (25 bp)
TATACCACCCAATTCGTACTACTTT
LOC_Os10g04660
OsAffx.30279.1.A1_at--1016--9893Chr10:2205488..2205512 (25 bp)
TACTACTTTCAGAATACGCCATCGG
LOC_Os10g04660
Target Sequence 
GGAACCGGCCGCACGGGCTGGCGAAGTGTCCGATGAGTCCGAGGAGGGCCGGGGCGTGGCGGGCACGGATGCGGCGGAGG
AAGGCGCGGCCGGAGATGAGGCGGCGGAACGTGGCGCAGGCGGCGGAGGCGCGGGCGAGGTCGACGGGGTCGTCGAGGTG
GAGGAAGATCTCCACCAGCATCTCGTCCGGGAGAGCGGGCGCCGCCGACGGCGAGGCCATCCTGCCGCCGTGGGAAGTGG
TCGGAGGTGTTGGGGAATGGATTGTTTCACTTAGGTGGAGAGGAGAATTTTCAGAATATGCCATCAAATTCGCACTACTT
TCAGGATATACCACCCAATTCGTACTACTTTCAGAATACGCCATCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30279.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis