Browse Element(s) Details


OsAffx.18134.1.S1_at

Description tigr:9638.m00381
TID=OsAffx.18134.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0471011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04660OsAffx.30279.1.A1_at11/1110+2204917..2209015hypothetical protein
LOC_Os10g04660OsAffx.6575.1.S1_at11/1110+2204917..2209015hypothetical protein
LOC_Os10g04660OsAffx.21673.1.S1_x_at2/1110+2204917..2209015hypothetical protein
LOC_Os10g04674Os.46731.1.S1_at11/1110+2210559..2215549NB-ARC domain containing protein, expressed
LOC_Os10g04674Os.46731.1.S1_x_at11/1110+2210559..2215549NB-ARC domain containing protein, expressed
LOC_Os10g04674Os.46731.2.S1_at11/1110+2210559..2215549NB-ARC domain containing protein, expressed
LOC_Os10g04690Os.46873.1.S1_a_at2/1110+2223366..2224991hypothetical protein
LOC_Os10g04700Os.46873.1.S1_a_at11/1110+2227150..2230121F-box domain containing protein, expressed
LOC_Os10g04710OsAffx.18134.1.S1_at11/1110+2232038..2232672hypothetical protein
LOC_Os10g04720Os.23264.1.A1_at10/1110+2233528..2236379Protein kinase domain containing protein, expressed
LOC_Os10g04730Os.46730.1.S1_at11/1110+2241638..2246767Protein kinase domain containing protein, expressed
LOC_Os10g04740Os.46012.2.S1_x_at8/1110+2250119..2255384retrotransposon protein, putative, unclassified
LOC_Os10g04740Os.27088.1.A1_x_at6/1110+2250119..2255384retrotransposon protein, putative, unclassified
LOC_Os10g04740Os.46012.3.S1_x_at4/1110+2250119..2255384retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18134.1.S1_at--317--5851Chr10:2232090..2232230 (25 bp)
TACCGTATTCGAGAAATGCTTCAAC
LOC_Os10g04710
OsAffx.18134.1.S1_at--83--10511Chr10:2232225..2232249 (25 bp)
TTCAACGTGGATGCCATCACTCATT
LOC_Os10g04710
OsAffx.18134.1.S1_at--263--391Chr10:2232240..2232264 (25 bp)
ATCACTCATTCAATCTAGCTTCGAC
LOC_Os10g04710
OsAffx.18134.1.S1_at--399--3051Chr10:2232251..2232275 (25 bp)
AATCTAGCTTCGACGTTGATGGAAT
LOC_Os10g04710
OsAffx.18134.1.S1_at--318--6091Chr10:2232317..2232341 (25 bp)
GAGTAGCGGTGTGTCAATCACCAGT
LOC_Os10g04710
OsAffx.18134.1.S1_at--855--7591Chr10:2232350..2232374 (25 bp)
GGGCACCTTGCAAGGCAACGATTCC
LOC_Os10g04710
OsAffx.18134.1.S1_at--963--6571Chr10:2232369..2232393 (25 bp)
GATTCCTGAGCTCAAGCAGCCAAGG
LOC_Os10g04710
OsAffx.18134.1.S1_at--694--7551Chr10:2232487..2232511 (25 bp)
GGGCCTGCTAGTGGATCCCGTCACG
LOC_Os10g04710
OsAffx.18134.1.S1_at--317--51Chr10:2232532..2232556 (25 bp)
ATTGTATCCTCTCCAACCACATTTC
LOC_Os10g04710
OsAffx.18134.1.S1_at--1138--9211Chr10:2232579..2232603 (25 bp)
TCCAGTCACTGTCCCCGAAGGAAAT
LOC_Os10g04710
OsAffx.18134.1.S1_at--689--10191Chr10:2232614..2232638 (25 bp)
TATTTTGGCCAGAGCAATTTTGTAA
LOC_Os10g04710
Target Sequence 
TACCGTATTCGAGAAATGCTTCAACGTGGATGCCATCACTCATTCAATCTAGCTTCGACGTTGATGGAATACGACGCCAG
GGGTGGGGAAGACAATGGATGTGGAGGAGAAGAGTAGCGGTGTGTCAATCACCAGTAATTGAGGGGGCACCTTGCAAGGC
AACGATTCCTGAGCTCAAGCAGCCAAGGGTGATGGTGGTGCGGCTTAGGGAGATGACGCAGCTTGGCAGTGGCGAGGAAA
AGCGATGGTGGTTGCTAGGGCGTTGGAGATGGGCAGAAAAGGGGCCTGCTAGTGGATCCCGTCACGCTTTGCCTCCTTCG
GCCACCATTGTATCCTCTCCAACCACATTTCCTCATGCTGCCGCTGAATCTTCTCCAGTCACTGTCCCCGAAGGAAATGT
GACTGAAATATTTTGGCCAGAGCAATTTTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18134.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis