Browse Element(s) Details


OsAffx.20761.1.S1_at

Description gb:NM_194767.1
DB_XREF= gi:37530893
TID=OsAffx.20761.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative gag-pol polyprotein (OSJNBa0087H07.4), mRNA.
PROD=putative gag-pol polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0464011/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04600Os.49314.1.S1_at11/1110+2176102..2178745F-box domain containing protein, expressed
LOC_Os10g04610Os.46460.1.S1_at11/1110+2180707..2183115F-box domain containing protein, expressed
LOC_Os10g04610Os.46313.2.S1_x_at1/1110+2180707..2183115F-box domain containing protein, expressed
LOC_Os10g04620Os.52409.1.S1_s_at11/1110+2185660..2190883hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os10g04620Os.52409.1.S1_at6/1110+2185660..2190883hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os10g04630NANA10+2196166..2197055expressed protein
LOC_Os10g04640OsAffx.20761.1.S1_at11/1110+2199524..2203866retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g04660OsAffx.30279.1.A1_at11/1110+2204917..2209015hypothetical protein
LOC_Os10g04660OsAffx.6575.1.S1_at11/1110+2204917..2209015hypothetical protein
LOC_Os10g04660OsAffx.21673.1.S1_x_at2/1110+2204917..2209015hypothetical protein
LOC_Os10g04674Os.46731.1.S1_at11/1110+2210559..2215549NB-ARC domain containing protein, expressed
LOC_Os10g04674Os.46731.1.S1_x_at11/1110+2210559..2215549NB-ARC domain containing protein, expressed
LOC_Os10g04674Os.46731.2.S1_at11/1110+2210559..2215549NB-ARC domain containing protein, expressed
LOC_Os10g04690Os.46873.1.S1_a_at2/1110+2223366..2224991hypothetical protein
LOC_Os10g04700Os.46873.1.S1_a_at11/1110+2227150..2230121F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20761.1.S1_at--187--6831Chr10:2203266..2203290 (25 bp)
GTTTCTTCAGAATCCAACAACAGTG
LOC_Os10g04640
OsAffx.20761.1.S1_at--170--9131Chr10:2203395..2203419 (25 bp)
TGCTGATTGGGCTGATTGCCTAGAT
LOC_Os10g04640
OsAffx.20761.1.S1_at--954--10711Chr10:2203442..2203466 (25 bp)
TTGCAGTTTTTCTAGGATCAAATCT
LOC_Os10g04640
OsAffx.20761.1.S1_at--699--2711Chr10:2203486..2203510 (25 bp)
AAGCAGGCTACAGTGTCAAGGTCAA
LOC_Os10g04640
OsAffx.20761.1.S1_at--56--6791Chr10:2203584..2203608 (25 bp)
GTTAGGAATCTCACACCCAGGCCCA
LOC_Os10g04640
OsAffx.20761.1.S1_at--325--3491Chr10:2203601..2203625 (25 bp)
CAGGCCCATCTCAGTTATGGTGTGA
LOC_Os10g04640
OsAffx.20761.1.S1_at--147--1051Chr10:2203632..2203656 (25 bp)
AGGTGCTACTTATCTATCTGTTAAT
LOC_Os10g04640
OsAffx.20761.1.S1_at--775--3871Chr10:2203649..2203673 (25 bp)
CTGTTAATCCTGTCTTTCATGCAAG
LOC_Os10g04640
OsAffx.20761.1.S1_at--643--5151Chr10:2203728..2203752 (25 bp)
GCAACTAGCACTACAGTTTGTACCA
LOC_Os10g04640
OsAffx.20761.1.S1_at--15--6871Chr10:2203743..2203767 (25 bp)
GTTTGTACCATCTCAAGACCAAGTG
LOC_Os10g04640
OsAffx.20761.1.S1_at--945--7511Chr10:2203765..2203789 (25 bp)
GTGGCAGATGGATTCACCAAAGCTC
LOC_Os10g04640
Target Sequence 
GTTTCTTCAGAATCCAACAACAGTGCATTGGGCAACTGTTAAGAGAATCCTTAGATATGTGAAAGGAACCTTGGGGCTTG
GTCTAAAAGTTGAAAAATCTTCATCAAATATTGTAAGTGCTTATTCTGATGCTGATTGGGCTGATTGCCTAGATGACAAA
AGATCTACAGGAGGCTTTGCAGTTTTTCTAGGATCAAATCTAATATCCTGGAATGCTAGGAAGCAGGCTACAGTGTCAAG
GTCAAGTACAGAAGCAGAGTATAAAGCATTGGCTAATGCAACTGCAGAAATAATGTGGGTGAGAAAACTACTGGAAGAGT
TAGGAATCTCACACCCAGGCCCATCTCAGTTATGGTGTGATAATATAGGTGCTACTTATCTATCTGTTAATCCTGTCTTT
CATGCAAGGACAAAACATATAGAGATAGATTATCACTTTGTTAGAGAACAGGTTGCACAGAAGCAACTAGCACTACAGTT
TGTACCATCTCAAGACCAAGTGGCAGATGGATTCACCAAAGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20761.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis