Browse Element(s) Details


Os.52409.1.S1_at

Description gb:AK066939.1
DB_XREF= gi:32976957
TID=Os.52409.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.52409 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013090G24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013091N22, full insert sequence.
FL= gb:AK098985.1 gb:AK066939.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g046206/11hydrolase, alpha/beta fold family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04580Os.46527.1.S1_at11/1110+2162756..2167342GTP-binding protein, putative, expressed
LOC_Os10g04590Os.46313.2.S1_x_at11/1110+2169440..2172683F-box domain containing protein, expressed
LOC_Os10g04590Os.46313.1.S1_at10/1110+2169440..2172683F-box domain containing protein, expressed
LOC_Os10g04600Os.49314.1.S1_at11/1110+2176102..2178745F-box domain containing protein, expressed
LOC_Os10g04610Os.46460.1.S1_at11/1110+2180707..2183115F-box domain containing protein, expressed
LOC_Os10g04610Os.46313.2.S1_x_at1/1110+2180707..2183115F-box domain containing protein, expressed
LOC_Os10g04620Os.52409.1.S1_s_at11/1110+2185660..2190883hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os10g04620Os.52409.1.S1_at6/1110+2185660..2190883hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os10g04630NANA10+2196166..2197055expressed protein
LOC_Os10g04640OsAffx.20761.1.S1_at11/1110+2199524..2203866retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g04660OsAffx.30279.1.A1_at11/1110+2204917..2209015hypothetical protein
LOC_Os10g04660OsAffx.6575.1.S1_at11/1110+2204917..2209015hypothetical protein
LOC_Os10g04660OsAffx.21673.1.S1_x_at2/1110+2204917..2209015hypothetical protein
LOC_Os10g04674Os.46731.1.S1_at11/1110+2210559..2215549NB-ARC domain containing protein, expressed
LOC_Os10g04674Os.46731.1.S1_x_at11/1110+2210559..2215549NB-ARC domain containing protein, expressed
LOC_Os10g04674Os.46731.2.S1_at11/1110+2210559..2215549NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52409.1.S1_at--285--1151NONE
AGTCGTTTGGAGGAGGTTTCGCTGC
NONE
Os.52409.1.S1_at--161--7151NONE
GTCGTTTGGAGGAGGTTTCGCTGCC
NONE
Os.52409.1.S1_at--77--9391NONE
TCGTTTGGAGGAGGTTTCGCTGCCC
NONE
Os.52409.1.S1_at--1143--4011NONE
CGTTTGGAGGAGGTTTCGCTGCCCA
NONE
Os.52409.1.S1_at--402--6871NONE
GTTTGGAGGAGGTTTCGCTGCCCAT
NONE
Os.52409.1.S1_at--154--191Chr10:2190780..2190804 (25 bp)
ATTTAGGTAAGGTTTTGCATGCCAT
LOC_Os10g04620
Os.52409.1.S1_at--453--10431Chr10:2190782..2190806 (25 bp)
TTAGGTAAGGTTTTGCATGCCATAT
LOC_Os10g04620
Os.52409.1.S1_at--684--10071Chr10:2190783..2190807 (25 bp)
TAGGTAAGGTTTTGCATGCCATATA
LOC_Os10g04620
Os.52409.1.S1_at--190--1031Chr10:2190784..2190808 (25 bp)
AGGTAAGGTTTTGCATGCCATATAT
LOC_Os10g04620
Os.52409.1.S1_at--598--7831Chr10:2190785..2190809 (25 bp)
GGTAAGGTTTTGCATGCCATATATA
LOC_Os10g04620
Os.52409.1.S1_at--142--7071Chr10:2190786..2190810 (25 bp)
GTAAGGTTTTGCATGCCATATATAA
LOC_Os10g04620
Target Sequence 
AGTCGTTTGGAGGAGGTTTCGCTGCCCATTATCATTTTGCATGGTGAGGGTGATTTGGTCACAGACCCAGCTGTGAGTAA
AGCTCTCTATGATAAAGCGAAGAGCTCAGATAAGACGCTTCGCCTTTATAAAGATGCATATCACGCTATCTTGGAAGGTG
AACCAGATGAGGCAATTTTTCAAGTCCTCGATGATATAATTTCTTGGCTGGATCAGCATTCTACAAAGAAAGTTCCATCG
TCATAAACTGCAAAGGCAGCATTGGGAAAATTTCTTTGCTACTGATGTATCCTTCGTTGCCGTTGATCCAAGATTCCAAC
AGTTGCGATTCCATTTTGGCACCAGCCCTGTCATGTTTCTTTTCTGATTGCAAATGTGCCTGTTGCTCATCAAGCTGTGT
ACATAATGTATATTATCCATCACAATTTGTTTCACAAAATTTAGGTAAGGTTTTGCATGCCATATATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52409.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis