Browse Element(s) Details


Os.46527.1.S1_at

Description gb:AK068217.1
DB_XREF= gi:32978235
TID=Os.46527.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46527 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative GTP-BINDING PROTEIN YPTV3 (OSJNBa0013J21.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013136D19, full insert sequence.
FL= gb:AK068217.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0458011/11GTP-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04550OsAffx.18131.2.S1_at11/1110+2142237..2143126hypothetical protein
LOC_Os10g04560OsAffx.18131.1.S1_at11/1110+2147271..2148713hypothetical protein
LOC_Os10g04560OsAffx.18131.2.S1_at1/1110+2147271..2148713hypothetical protein
LOC_Os10g04570OsAffx.18131.3.S1_at11/1110+2153248..2154690NB-ARC domain containing protein
LOC_Os10g04580Os.46527.1.S1_at11/1110+2162756..2167342GTP-binding protein, putative, expressed
LOC_Os10g04590Os.46313.2.S1_x_at11/1110+2169440..2172683F-box domain containing protein, expressed
LOC_Os10g04590Os.46313.1.S1_at10/1110+2169440..2172683F-box domain containing protein, expressed
LOC_Os10g04600Os.49314.1.S1_at11/1110+2176102..2178745F-box domain containing protein, expressed
LOC_Os10g04610Os.46460.1.S1_at11/1110+2180707..2183115F-box domain containing protein, expressed
LOC_Os10g04610Os.46313.2.S1_x_at1/1110+2180707..2183115F-box domain containing protein, expressed
LOC_Os10g04620Os.52409.1.S1_s_at11/1110+2185660..2190883hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os10g04620Os.52409.1.S1_at6/1110+2185660..2190883hydrolase, alpha/beta fold family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46527.1.S1_at--1063--1251Chr10:2163331..2163355 (25 bp)
AGATATCACAGGTTCTCCTCATCGG
LOC_Os10g04580
Os.46527.1.S1_at--972--491Chr10:2163311..2163335 (25 bp)
ATCGGCAATTCCTGACGCAAGCAGT
LOC_Os10g04580
Os.46527.1.S1_at--1004--10111Chr10:2163258..2163282 (25 bp)
TATGATCCAAGAGCTCGCATGCATT
LOC_Os10g04580
Os.46527.1.S1_at--308--4991Chr10:2163242..2163266 (25 bp)
GCATGCATTACCACTTCCAATGTGA
LOC_Os10g04580
Os.46527.1.S1_at--806--7851Chr10:2163199..2163223 (25 bp)
GGTATTTTACTTGATCCCACTTTGT
LOC_Os10g04580
Os.46527.1.S1_at--112--8751Chr10:2163175..2163199 (25 bp)
TGTAATCCTGATATGCTCACCTGTC
LOC_Os10g04580
Os.46527.1.S1_at--884--7211Chr10:2163129..2163153 (25 bp)
GTCGAGGTGCTCTTTTTGATTGTCC
LOC_Os10g04580
Os.46527.1.S1_at--324--8831Chr10:2163113..2163137 (25 bp)
TGATTGTCCTCATCTTGGCATACCA
LOC_Os10g04580
Os.46527.1.S1_at--306--7071Chr10:2162903..2162927 (25 bp)
GTAAGGGCGATTTCTGGGCTGCAAA
LOC_Os10g04580
Os.46527.1.S1_at--1065--6851Chr10:2162870..2162894 (25 bp)
GTTTGTCAGTACTGTGTTCGGTCTT
LOC_Os10g04580
Os.46527.1.S1_at--1021--1211Chr10:2162842..2162866 (25 bp)
AGTTCAAATGTGTTCATCCCTTGTA
LOC_Os10g04580
Target Sequence 
AGATATCACAGGTTCTCCTCATCGGCAATTCCTGACGCAAGCAGTAGTAGAACGAACCGAGCAGATATCAATATATGATC
CAAGAGCTCGCATGCATTACCACTTCCAATGTGAAAAATCTCATGCTGCTATGGTATTTTACTTGATCCCACTTTGTGTA
ATCCTGATATGCTCACCTGTCTTGCCTTGAAATGTGCATGTAGTCGAGGTGCTCTTTTTGATTGTCCTCATCTTGGCATA
CCACTAATGATCAATTCTTTTATATCTTCTATATTGTTGAATTGTGTTTTGTAATGAAGATCACACATGTTTATAAATTA
ATTAATAGAAGCATTTANGGTGGCCGGAGTGTGTGCTGTTGTCAGTGTAACACCGATTTATCATTTTCGATCAAGCTGAG
TTCTTGCCAACTCCCTCAAAAGTCATCTGTAAGGGCGATTTCTGGGCTGCAAATCAACGTTGTTTGTCAGTACTGTGTTC
GGTCTTCAAAGTTCAAATGTGTTCATCCCTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46527.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis