Browse Element(s) Details


OsAffx.18131.2.S1_at

Description tigr:9638.m00364
TID=OsAffx.18131.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0455011/11hypothetical protein
LOC_Os10g045601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04500OsAffx.18128.1.S1_at11/1110+2117317..2117652hypothetical protein
LOC_Os10g04510OsAffx.18129.2.S1_at11/1110+2127512..2128549expressed protein
LOC_Os10g04520Os.19044.1.S1_at9/1110+2131120..2132645expressed protein
LOC_Os10g04530OsAffx.20763.1.S1_at11/1110+2132830..2134112hypothetical protein
LOC_Os10g04540Os.19044.1.S1_at2/1110+2135413..2136864hypothetical protein
LOC_Os10g04540Os.46873.3.S1_at1/1110+2135413..2136864hypothetical protein
LOC_Os10g04550OsAffx.18131.2.S1_at11/1110+2142237..2143126hypothetical protein
LOC_Os10g04560OsAffx.18131.1.S1_at11/1110+2147271..2148713hypothetical protein
LOC_Os10g04560OsAffx.18131.2.S1_at1/1110+2147271..2148713hypothetical protein
LOC_Os10g04570OsAffx.18131.3.S1_at11/1110+2153248..2154690NB-ARC domain containing protein
LOC_Os10g04580Os.46527.1.S1_at11/1110+2162756..2167342GTP-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18131.2.S1_at--594--1551Chr10:2142402..2142426 (25 bp)
AGCTCAAGACCCGAAGAGGAGGTTA
LOC_Os10g04550
OsAffx.18131.2.S1_at--650--7871Chr10:2142422..2142446 (25 bp)
GGTTAGCAACTCCAATACTCTGTCA
LOC_Os10g04550
OsAffx.18131.2.S1_at--25--311Chr10:2142436..2142460 (25 bp)
ATACTCTGTCAACCCGTACATGTTA
LOC_Os10g04550
OsAffx.18131.2.S1_at--103--7031Chr10:2142451..2142475 (25 bp)
GTACATGTTATGTTGATCCTTTTCA
LOC_Os10g04550
OsAffx.18131.2.S1_at--814--6591Chr10:2142462..2142486 (25 bp)
GTTGATCCTTTTCATACTTCACAAA
LOC_Os10g04550
OsAffx.18131.2.S1_at--249--9611Chr10:2142473..2142497 (25 bp)
TCATACTTCACAAAGCTATACCATT
LOC_Os10g04550
OsAffx.18131.2.S1_at--884--1591Chr10:2142508..2142532 (25 bp)
AGCTGCAAAGCACATTGGACAGTTT
LOC_Os10g04550
OsAffx.18131.2.S1_at--811--10811Chr10:2142562..2142586 (25 bp)
TTGTCATTCTTCTTGGTGGTTGCGA
LOC_Os10g04550
OsAffx.18131.2.S1_at--923--8571Chr10:2142578..2142602 (25 bp)
TGGTTGCGAACGGATGTCTCCTAAG
LOC_Os10g04550
OsAffx.18131.2.S1_at--469--7171Chr10:2142593..2142617 (25 bp)
GTCTCCTAAGCCCTATGACACATAT
LOC_Os10g04550
OsAffx.18131.2.S1_at--306--4552Chr10:2142602..2142626 (25 bp)
GCCCTATGACACATATCTTTACTTT
LOC_Os10g04550
Target Sequence 
AGCTCAAGACCCGAAGAGGAGGTTAGCAACTCCAATACTCTGTCAACCCGTACATGTTATGTTGATCCTTTTCATACTTC
ACAAAGCTATACCATTAGACATGATCAGCTGCAAAGCACATTGGACAGTTTAGAAACAATTGTTTCCAGTATGACAGAGT
TTGTCATTCTTCTTGGTGGTTGCGAACGGATGTCTCCTAAGCCCTATGACACATATCTTTACTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18131.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis