Browse Element(s) Details


OsAffx.18131.3.S1_at

Description tigr:9638.m00366
TID=OsAffx.18131.3
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0457011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04510OsAffx.18129.2.S1_at11/1110+2127512..2128549expressed protein
LOC_Os10g04520Os.19044.1.S1_at9/1110+2131120..2132645expressed protein
LOC_Os10g04530OsAffx.20763.1.S1_at11/1110+2132830..2134112hypothetical protein
LOC_Os10g04540Os.19044.1.S1_at2/1110+2135413..2136864hypothetical protein
LOC_Os10g04540Os.46873.3.S1_at1/1110+2135413..2136864hypothetical protein
LOC_Os10g04550OsAffx.18131.2.S1_at11/1110+2142237..2143126hypothetical protein
LOC_Os10g04560OsAffx.18131.1.S1_at11/1110+2147271..2148713hypothetical protein
LOC_Os10g04560OsAffx.18131.2.S1_at1/1110+2147271..2148713hypothetical protein
LOC_Os10g04570OsAffx.18131.3.S1_at11/1110+2153248..2154690NB-ARC domain containing protein
LOC_Os10g04580Os.46527.1.S1_at11/1110+2162756..2167342GTP-binding protein, putative, expressed
LOC_Os10g04590Os.46313.2.S1_x_at11/1110+2169440..2172683F-box domain containing protein, expressed
LOC_Os10g04590Os.46313.1.S1_at10/1110+2169440..2172683F-box domain containing protein, expressed
LOC_Os10g04600Os.49314.1.S1_at11/1110+2176102..2178745F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18131.3.S1_at--904--4831Chr10:2154237..2154261 (25 bp)
GCTAACAGTATTGCTCGGTGGCTCA
LOC_Os10g04570
OsAffx.18131.3.S1_at--740--9431Chr10:2154251..2154275 (25 bp)
TCGGTGGCTCATTCATCACAGCAAA
LOC_Os10g04570
OsAffx.18131.3.S1_at--708--10531Chr10:2154262..2154286 (25 bp)
TTCATCACAGCAAACGTGTTCGCAG
LOC_Os10g04570
OsAffx.18131.3.S1_at--85--2391Chr10:2154273..2154297 (25 bp)
AAACGTGTTCGCAGATATTTTCAGA
LOC_Os10g04570
OsAffx.18131.3.S1_at--732--2231Chr10:2154345..2154369 (25 bp)
AAATACGGTGCTGAAAAATTTCTCA
LOC_Os10g04570
OsAffx.18131.3.S1_at--1042--1331Chr10:2154369..2154393 (25 bp)
AGAGTTCAGTGAACACCCTAAGCTT
LOC_Os10g04570
OsAffx.18131.3.S1_at--201--7152Chr10:2154455..2154479 (25 bp)
GTCTTATGCCTCCTCATTGTGAAGG
LOC_Os10g04570
OsAffx.18131.3.S1_at--921--4271Chr10:2154466..2154490 (25 bp)
CCTCATTGTGAAGGCTATGGGTCGA
LOC_Os10g04570
OsAffx.18131.3.S1_at--930--3451Chr10:2154516..2154540 (25 bp)
CAGTGACCTGATAGCTGACTCCATT
LOC_Os10g04570
OsAffx.18131.3.S1_at--962--291Chr10:2154526..2154550 (25 bp)
ATAGCTGACTCCATTGTTGTACCAA
LOC_Os10g04570
OsAffx.18131.3.S1_at--819--5371Chr10:2154636..2154660 (25 bp)
GAAGAATTTTCAGCATGCGGACTCA
LOC_Os10g04570
Target Sequence 
GCTAACAGTATTGCTCGGTGGCTCATTCATCACAGCAAACGTGTTCGCAGATATTTTCAGAAAGAATCAAAATGTTCACT
TATGGCTCCATGTCTTAAAAAAATATAGAAATACGGTGCTGAAAAATTTCTCAGAGTTCAGTGAACACCCTAAGCTTCTT
TTGGAGAAAGAACATCTTATAGATATAACCAAACTTGCATCGTCATCCTCTCCACTTCGTCTTATGCCTCCTCATTGTGA
AGGCTATGGGTCGAAGAGGAGGTTAACCAAGGTGATGTTCAGTGACCTGATAGCTGACTCCATTGTTGTACCAAAGGAGG
ACTTTGAGTTAGTCGCATGGGAATCACGGATACCCCCTTATAGAAGGTTTGTAAACATTGTTTTGTATTGTGATGATGAG
AAGAATTTTCAGCATGCGGACTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18131.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis