Browse Element(s) Details


Os.19044.1.S1_at

Description gb:CA764426
DB_XREF= gi:27546225
DB_XREF=AF53-Rpf_03_I10_T7_037.ab1
CLONE=C0000970
TID=Os.19044.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.19044 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0013J21.15), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g045209/11expressed protein
LOC_Os10g045402/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04480OsAffx.30278.1.S1_at11/1110+2106745..2107886hypothetical protein
LOC_Os10g04490OsAffx.18129.1.S1_at10/1110+2112993..2115820hypothetical protein
LOC_Os10g04500OsAffx.18128.1.S1_at11/1110+2117317..2117652hypothetical protein
LOC_Os10g04510OsAffx.18129.2.S1_at11/1110+2127512..2128549expressed protein
LOC_Os10g04520Os.19044.1.S1_at9/1110+2131120..2132645expressed protein
LOC_Os10g04530OsAffx.20763.1.S1_at11/1110+2132830..2134112hypothetical protein
LOC_Os10g04540Os.19044.1.S1_at2/1110+2135413..2136864hypothetical protein
LOC_Os10g04540Os.46873.3.S1_at1/1110+2135413..2136864hypothetical protein
LOC_Os10g04550OsAffx.18131.2.S1_at11/1110+2142237..2143126hypothetical protein
LOC_Os10g04560OsAffx.18131.1.S1_at11/1110+2147271..2148713hypothetical protein
LOC_Os10g04560OsAffx.18131.2.S1_at1/1110+2147271..2148713hypothetical protein
LOC_Os10g04570OsAffx.18131.3.S1_at11/1110+2153248..2154690NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19044.1.S1_at--28--2531Chr10:2132193..2132217 (25 bp)
AACTTCTGGCTTTGCATGCTGAACA
LOC_Os10g04520
Os.19044.1.S1_at--355--2132Chr10:2136520..2136544 (25 bp)
ACAGTGGCTGAAAAGAACTTCTCCT
LOC_Os10g04540
Os.19044.1.S1_at--232--5491Chr10:2132240..2132264 (25 bp)
GAACTTCTCCTTGTACGGTGAGCAT
LOC_Os10g04520
Os.19044.1.S1_at--462--3971Chr10:2132255..2132279 (25 bp)
CGGTGAGCATACAAGGTTACTTCTT
LOC_Os10g04520
Os.19044.1.S1_at--1082--2891Chr10:2132284..2132308 (25 bp)
AAGGTCATCGTGTAGACATCACCAA
LOC_Os10g04520
Os.19044.1.S1_at--172--391Chr10:2132301..2132325 (25 bp)
ATCACCAACTTTGATTCATCTCCAG
LOC_Os10g04520
Os.19044.1.S1_at--1026--9211Chr10:2132321..2132345 (25 bp)
TCCAGCTGCTCCATTGCACATCGTA
LOC_Os10g04520
Os.19044.1.S1_at--319--3111Chr10:2132361..2132385 (25 bp)
AATAGTACAGGGAAGGACTTGCCAA
LOC_Os10g04520
Os.19044.1.S1_at--732--2012Chr10:2136702..2136726 (25 bp)
ACTAGATCCTAGTGTTAGACCAAAA
LOC_Os10g04540
Os.19044.1.S1_at--704--6511NONE
GATTTTCCTGAAGATAAACCCTTGT
NONE
Os.19044.1.S1_at--981--7211Chr10:2136845..2136869 (25 bp)
GTCGAGGAGATCCTTCCTAATCTTA
NONE
Target Sequence 
AACTTCTGGCTTTGCATGCTGAACAGGTGCATAACAGTGGCTGAAAAGAACTTCTCCTTGTACGGTGAGCATACAAGGTT
ACTTCTTGAACAAGGTCATCGTGTAGACATCACCAACTTTGATTCATCTCCAGCTGCTCCATTGCACATCGTACCANGTN
TTGGTGCCAATAGTACAGGGAAGGACTTGCCAAGGGTTAAATTTACAGAACTATTACTAGATCCTAGTGTTAGACCAAAA
GNTNNGNTNNNTNTNNNGNNNNNNNNNNNNNNNNTANNTNNNTANACATCATTTGTTCACTTTGTTCCAAATTATTCTCA
AGATTTTCCTGAAGATAAACCCTTGTCAGGAAGGAAGCGTCGAGGAGATCCTTCCTAATCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19044.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis