Browse Element(s) Details


OsAffx.30278.1.S1_at

Description tigr:9638.m00357
TID=OsAffx.30278.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0448011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04450OsAffx.18126.1.S1_at11/1110+2082437..2083870hypothetical protein
LOC_Os10g04460OsAffx.30277.1.S1_at10/1110+2085312..2085780hypothetical protein
LOC_Os10g04470OsAffx.20764.1.S1_at11/1110+2091904..2093334hypothetical protein
LOC_Os10g04480OsAffx.30278.1.S1_at11/1110+2106745..2107886hypothetical protein
LOC_Os10g04490OsAffx.18129.1.S1_at10/1110+2112993..2115820hypothetical protein
LOC_Os10g04500OsAffx.18128.1.S1_at11/1110+2117317..2117652hypothetical protein
LOC_Os10g04510OsAffx.18129.2.S1_at11/1110+2127512..2128549expressed protein
LOC_Os10g04520Os.19044.1.S1_at9/1110+2131120..2132645expressed protein
LOC_Os10g04530OsAffx.20763.1.S1_at11/1110+2132830..2134112hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30278.1.S1_at--133--5391Chr10:2107396..2107420 (25 bp)
GAAGCACAGACCCAGTAGACCATCC
LOC_Os10g04480
OsAffx.30278.1.S1_at--851--5291Chr10:2107461..2107485 (25 bp)
GAAGGAAGGCTTATCCCAGCCAACA
LOC_Os10g04480
OsAffx.30278.1.S1_at--458--10551Chr10:2107519..2107543 (25 bp)
TTCATTTCTGGCTTTGCAAACTGAG
LOC_Os10g04480
OsAffx.30278.1.S1_at--368--5991Chr10:2107541..2107565 (25 bp)
GAGACAGGTCCAAATTACAGCCAAG
LOC_Os10g04480
OsAffx.30278.1.S1_at--1051--8831Chr10:2107607..2107631 (25 bp)
TGATCAAGGTCATCCAGCACATTTC
LOC_Os10g04480
OsAffx.30278.1.S1_at--154--10331Chr10:2107628..2107652 (25 bp)
TTTCACGGGCTACATATTGTCTCCT
LOC_Os10g04480
OsAffx.30278.1.S1_at--154--9271Chr10:2107649..2107673 (25 bp)
TCCTCCAACTATTATCACACCAAAT
LOC_Os10g04480
OsAffx.30278.1.S1_at--234--7772Chr10:2125058..2125082 (25 bp)
GGTGACTTGCTAACAGGCCATATTT
NONE
OsAffx.30278.1.S1_at--680--7651Chr10:2107765..2107789 (25 bp)
GGGAGTCGAGGATACCGCCATACAC
LOC_Os10g04480
OsAffx.30278.1.S1_at--108--9351Chr10:2107808..2107832 (25 bp)
TCGCTTCTGTCTAAGTCTTTCTCAA
LOC_Os10g04480
OsAffx.30278.1.S1_at--307--1271Chr10:2107832..2107856 (25 bp)
AGATCAACCTGAATCACCTTTGTCA
LOC_Os10g04480
Target Sequence 
GAAGCACAGACCCAGTAGACCATCCACAACTCATTCCAATTGTGGAAGAATTCGCAGAGCTATTGGAAGGAAGGCTTATC
CCAGCCAACATACTTGCAGATGTATTGAGAAAGAATTTGAATGTTCATTTCTGGCTTTGCAAACTGAGACAGGTCCAAAT
TACAGCCAAGAAGAACATGACCATGTCTGGCGCCCATCCACACAAACTTTTTGATCAAGGTCATCCAGCACATTTCACGG
GCTACATATTGTCTCCTCCAACTATTATCACACCAAATGTTCCCCAAAATGATTTGCCACAGTTGAGATTTGGTGACTTG
CTAACAGGCCATATTTTTCCACCGAACGGTGATTTTAAGTTAATTTCATGGGAGTCGAGGATACCGCCATACACTTCATT
TGTTCACACGGCTCGCTTCTGTCTAAGTCTTTCTCAAGATCAACCTGAATCACCTTTGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30278.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis