Browse Element(s) Details


OsAffx.18128.1.S1_at

Description tigr:9638.m00359
TID=OsAffx.18128.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0450011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04470OsAffx.20764.1.S1_at11/1110+2091904..2093334hypothetical protein
LOC_Os10g04480OsAffx.30278.1.S1_at11/1110+2106745..2107886hypothetical protein
LOC_Os10g04490OsAffx.18129.1.S1_at10/1110+2112993..2115820hypothetical protein
LOC_Os10g04500OsAffx.18128.1.S1_at11/1110+2117317..2117652hypothetical protein
LOC_Os10g04510OsAffx.18129.2.S1_at11/1110+2127512..2128549expressed protein
LOC_Os10g04520Os.19044.1.S1_at9/1110+2131120..2132645expressed protein
LOC_Os10g04530OsAffx.20763.1.S1_at11/1110+2132830..2134112hypothetical protein
LOC_Os10g04540Os.19044.1.S1_at2/1110+2135413..2136864hypothetical protein
LOC_Os10g04540Os.46873.3.S1_at1/1110+2135413..2136864hypothetical protein
LOC_Os10g04550OsAffx.18131.2.S1_at11/1110+2142237..2143126hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18128.1.S1_at--127--3311Chr10:2117598..2117622 (25 bp)
CACAATTTCCTGCTTGATGGTTGGC
LOC_Os10g04500
OsAffx.18128.1.S1_at--202--8496Chr10:8482706..8482888 (25 bp)
TGGCTGCGCGTCGAAGGTGAAAACC
NONE
OsAffx.18128.1.S1_at--1126--4772Chr10:2117390..2117573 (25 bp)
GCTGCGCGTCGAAGGTGAAAACCAT
LOC_Os10g04500
OsAffx.18128.1.S1_at--978--4111Chr10:2117387..2117570 (25 bp)
GCGCGTCGAAGGTGAAAACCATGGC
LOC_Os10g04500
OsAffx.18128.1.S1_at--225--2371Chr10:2117372..2117396 (25 bp)
AAACCATGGCATGGATTCCCTGGAC
LOC_Os10g04500
OsAffx.18128.1.S1_at--547--2631Chr10:2117371..2117395 (25 bp)
AACCATGGCATGGATTCCCTGGACG
LOC_Os10g04500
OsAffx.18128.1.S1_at--569--1731Chr10:2117370..2117394 (25 bp)
ACCATGGCATGGATTCCCTGGACGG
LOC_Os10g04500
OsAffx.18128.1.S1_at--755--3491Chr10:2117368..2117392 (25 bp)
CATGGCATGGATTCCCTGGACGGGC
LOC_Os10g04500
OsAffx.18128.1.S1_at--753--811Chr10:2117362..2117386 (25 bp)
ATGGATTCCCTGGACGGGCTGCGGT
LOC_Os10g04500
OsAffx.18128.1.S1_at--1045--8091Chr10:2117351..2117375 (25 bp)
GGACGGGCTGCGGTGGCACTTTCAG
LOC_Os10g04500
OsAffx.18128.1.S1_at--797--7571Chr10:2117347..2117371 (25 bp)
GGGCTGCGGTGGCACTTTCAGTGTC
LOC_Os10g04500
Target Sequence 
CACAATTTCCTGCTTGATGGTTGGCCGGTGGTGAGGTGCTGGCGCGGTGGCTGCGCGTCGAAGGTGAAAACCATGGCATG
GATTCCCTGGACGGGCTGCGGTGGCACTTTCAGTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18128.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis