Browse Element(s) Details


OsAffx.20764.1.S1_at

Description tigr:9638.m00356
TID=OsAffx.20764.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0447011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04410OsAffx.18125.1.S1_at10/1110+2069274..2070969hypothetical protein
LOC_Os10g04429Os.46537.1.S1_at11/1110+2071575..2076080Transferase family protein, expressed
LOC_Os10g04429OsAffx.18124.1.S1_x_at3/1110+2071575..2076080Transferase family protein, expressed
LOC_Os10g04450OsAffx.18126.1.S1_at11/1110+2082437..2083870hypothetical protein
LOC_Os10g04460OsAffx.30277.1.S1_at10/1110+2085312..2085780hypothetical protein
LOC_Os10g04470OsAffx.20764.1.S1_at11/1110+2091904..2093334hypothetical protein
LOC_Os10g04480OsAffx.30278.1.S1_at11/1110+2106745..2107886hypothetical protein
LOC_Os10g04490OsAffx.18129.1.S1_at10/1110+2112993..2115820hypothetical protein
LOC_Os10g04500OsAffx.18128.1.S1_at11/1110+2117317..2117652hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20764.1.S1_at--437--2271Chr10:2092471..2092495 (25 bp)
AAATCTTGCGAGGTTTGGATCAGTA
LOC_Os10g04470
OsAffx.20764.1.S1_at--1018--6431Chr10:2092454..2092478 (25 bp)
GATCAGTAAAGGCAGTTCGTCTAAA
LOC_Os10g04470
OsAffx.20764.1.S1_at--181--6151Chr10:2092416..2092440 (25 bp)
GAGGTGTACAACTATCTTTTCAAGA
LOC_Os10g04470
OsAffx.20764.1.S1_at--1010--8171Chr10:2092363..2092387 (25 bp)
GGAAGATCCTAAGATGGCATCGGTT
LOC_Os10g04470
OsAffx.20764.1.S1_at--267--6431Chr10:2092332..2092356 (25 bp)
GATCTTGCAGTAGTCCTTGGTGGAT
LOC_Os10g04470
OsAffx.20764.1.S1_at--183--7271Chr10:2092320..2092344 (25 bp)
GTCCTTGGTGGATCCCTGATAACAG
LOC_Os10g04470
OsAffx.20764.1.S1_at--917--8311Chr10:2092247..2092271 (25 bp)
GGCTCCACATATTGCAACGCTTCGA
LOC_Os10g04470
OsAffx.20764.1.S1_at--868--211Chr10:2092138..2092162 (25 bp)
ATTTGTGTCATCTTATCCTACTCGT
LOC_Os10g04470
OsAffx.20764.1.S1_at--368--10431Chr10:2092126..2092150 (25 bp)
TTATCCTACTCGTCTTCATATCATG
LOC_Os10g04470
OsAffx.20764.1.S1_at--130--3031Chr10:2092063..2092087 (25 bp)
AATGCCAACTATATTCTTCGGAGAT
LOC_Os10g04470
OsAffx.20764.1.S1_at--998--6891Chr10:2091954..2091978 (25 bp)
GTATCATCTGGTACATCTTTTGTCG
LOC_Os10g04470
Target Sequence 
AAATCTTGCGAGGTTTGGATCAGTAAAGGCAGTTCGTCTAAATAGTTTATCAAAAGAGGTGTACAACTATCTTTTCAAGA
AGTTAGCATTTGGAAGCATTGATGAAAAGGAAGATCCTAAGATGGCATCGGTTGCAAATGATCTTGCAGTAGTCCTTGGT
GGATCCCTGATAACAGCAAATGTGATTGCTGACTTGCTTAGAAGGAATCATGATGTTCACTTCTGGCTCCACATATTGCA
ACGCTTCGAGGGGATGGTCAAGAATAATTTATCAAAATATGGTGAACATCCAAAAGATATCATTGAGAAAGAGAAGCCAG
TAGATGCCACTAGATTTGTGTCATCTTATCCTACTCGTCTTCATATCATGCCACCTCGAGTAGAAAGGGACGATCTTCCA
AACATAGGAATGCCAACTATATTCTTCGGAGATCTAATAGCTGGATCTGTGGCAATTCCAAATGGTGATTTTGAAATAGT
AACATGGAAATCACGAATACCACCTTATACTAAGTATGTATCATCTGGTACATCTTTTGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20764.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis