Browse Element(s) Details


Os.46537.1.S1_at

Description gb:AK066866.1
DB_XREF= gi:32976884
TID=Os.46537.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46537 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative hsr201 hypersensitivity-related protein (OSJNBa0013J21.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013088O08, full insert sequence.
FL= gb:AK066866.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0442911/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04380OsAffx.30275.1.S1_at11/1110+2046641..2048152hypothetical protein
LOC_Os10g04390OsAffx.30276.1.S1_at11/1110+2057176..2060535hypothetical protein
LOC_Os10g04400OsAffx.18124.1.S1_at11/1110+2062030..2065228Transferase family protein
LOC_Os10g04400OsAffx.18124.1.S1_x_at11/1110+2062030..2065228Transferase family protein
LOC_Os10g04410OsAffx.18125.1.S1_at10/1110+2069274..2070969hypothetical protein
LOC_Os10g04429Os.46537.1.S1_at11/1110+2071575..2076080Transferase family protein, expressed
LOC_Os10g04429OsAffx.18124.1.S1_x_at3/1110+2071575..2076080Transferase family protein, expressed
LOC_Os10g04450OsAffx.18126.1.S1_at11/1110+2082437..2083870hypothetical protein
LOC_Os10g04460OsAffx.30277.1.S1_at10/1110+2085312..2085780hypothetical protein
LOC_Os10g04470OsAffx.20764.1.S1_at11/1110+2091904..2093334hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46537.1.S1_at--351--5731Chr10:2075652..2075676 (25 bp)
GACTGCGGCGAGCATGTACAGCTAC
LOC_Os10g04429
Os.46537.1.S1_at--980--9851Chr10:2075668..2075692 (25 bp)
TACAGCTACTACGAGAGGTGCAAGA
LOC_Os10g04429
Os.46537.1.S1_at--1088--10611Chr10:2075755..2075779 (25 bp)
TTCGTGCGGGAGATCACCGGATGCT
LOC_Os10g04429
Os.46537.1.S1_at--218--6351Chr10:2075774..2075798 (25 bp)
GATGCTCCAACACCAGATCAGCGAA
LOC_Os10g04429
Os.46537.1.S1_at--42--3231Chr10:2075815..2075839 (25 bp)
CAAGTCGGGCTTTGTTGGGCCATGA
LOC_Os10g04429
Os.46537.1.S1_at--906--10251Chr10:2075825..2075849 (25 bp)
TTTGTTGGGCCATGATTGTGCTACT
LOC_Os10g04429
Os.46537.1.S1_at--964--8671Chr10:2075841..2075865 (25 bp)
TGTGCTACTTTGTACGGGCTATTGG
LOC_Os10g04429
Os.46537.1.S1_at--766--5191Chr10:2075866..2075890 (25 bp)
GCAATATCGTGTTTAGGCAGCTCTA
LOC_Os10g04429
Os.46537.1.S1_at--220--5071Chr10:2075882..2075906 (25 bp)
GCAGCTCTATAAAGCATGGCCATTA
LOC_Os10g04429
Os.46537.1.S1_at--878--1471Chr10:2075968..2075992 (25 bp)
AGCAATCAGGGTGACTTCTCGATAT
LOC_Os10g04429
Os.46537.1.S1_at--387--95110Chr10:2075984..2076008 (25 bp)
TCTCGATATACCAGGAGGGCATAGT
LOC_Os10g04429
Target Sequence 
GACTGCGGCGAGCATGTACAGCTACTACGAGAGGTGCAAGATTGGAGCAGGAGAGGAAGCCGCAGTGGTGTCCATGTGCT
TGCCGGCGCCGGCGATGGAGAGGTTCGTGCGGGAGATCACCGGATGCTCCAACACCAGATCAGCGAAGAGCGCCATGTAG
AGGCAAGTCGGGCTTTGTTGGGCCATGATTGTGCTACTTTGTACGGGCTATTGGGCAATATCGTGTTTAGGCAGCTCTAT
AAAGCATGGCCATTATCAATTGATAGGAGAAGATTTATAATGGTTGGGTGGCCATGACGGGTTGTCGAAAAAACTCAGCA
ATCAGGGTGACTTCTCGATATACCAGGAGGGCATAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46537.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis