Browse Element(s) Details


OsAffx.30275.1.S1_at

Description tigr:9638.m00347
TID=OsAffx.30275.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0438011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04316OsAffx.25936.3.S1_at11/1110+2019282..2025668retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g04316OsAffx.25936.7.S1_s_at8/1110+2019282..2025668retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g04316OsAffx.25936.5.S1_x_at8/1110+2019282..2025668retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g04316OsAffx.25936.1.S1_s_at7/1110+2019282..2025668retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g04316OsAffx.25936.2.S1_x_at3/1110+2019282..2025668retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g04316OsAffx.25936.1.S1_at1/1110+2019282..2025668retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g04342Os.51966.1.S1_at11/1110+2028190..2041707disease resistance protein RPM1 homolog, putative, expressed
LOC_Os10g04342OsAffx.30274.1.S1_x_at11/1110+2028190..2041707disease resistance protein RPM1 homolog, putative, expressed
LOC_Os10g04342OsAffx.30274.1.S1_at11/1110+2028190..2041707disease resistance protein RPM1 homolog, putative, expressed
LOC_Os10g04342Os.11925.1.S1_at8/1110+2028190..2041707disease resistance protein RPM1 homolog, putative, expressed
LOC_Os10g04342Os.36453.1.S1_at1/1110+2028190..2041707disease resistance protein RPM1 homolog, putative, expressed
LOC_Os10g04370Os.46492.1.S1_at11/1110+2043569..2044965F-box domain containing protein, expressed
LOC_Os10g04380OsAffx.30275.1.S1_at11/1110+2046641..2048152hypothetical protein
LOC_Os10g04390OsAffx.30276.1.S1_at11/1110+2057176..2060535hypothetical protein
LOC_Os10g04400OsAffx.18124.1.S1_at11/1110+2062030..2065228Transferase family protein
LOC_Os10g04400OsAffx.18124.1.S1_x_at11/1110+2062030..2065228Transferase family protein
LOC_Os10g04410OsAffx.18125.1.S1_at10/1110+2069274..2070969hypothetical protein
LOC_Os10g04429Os.46537.1.S1_at11/1110+2071575..2076080Transferase family protein, expressed
LOC_Os10g04429OsAffx.18124.1.S1_x_at3/1110+2071575..2076080Transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30275.1.S1_at--869--8511Chr10:2047124..2047148 (25 bp)
TGGAAGCTCGAACCCATTGGATCAC
LOC_Os10g04380
OsAffx.30275.1.S1_at--260--8571Chr10:2046991..2047015 (25 bp)
TGGATCCGTGTGCTGAACCTATACA
LOC_Os10g04380
OsAffx.30275.1.S1_at--619--5951Chr10:2046953..2046977 (25 bp)
GAGCAACTTGTCCTTGTATGGTGAA
LOC_Os10g04380
OsAffx.30275.1.S1_at--342--8611Chr10:2046935..2046959 (25 bp)
TGGTGAACACCCTAAATCTCTACTT
LOC_Os10g04380
OsAffx.30275.1.S1_at--1144--331Chr10:2046886..2046910 (25 bp)
ATAACTGCATTTTGCCCGTCATTGG
LOC_Os10g04380
OsAffx.30275.1.S1_at--1045--7131Chr10:2046869..2046893 (25 bp)
GTCATTGGCTACAAACTCACTTCGA
LOC_Os10g04380
OsAffx.30275.1.S1_at--934--9671Chr10:2046853..2046877 (25 bp)
TCACTTCGAATCACACTGCTAACTG
LOC_Os10g04380
OsAffx.30275.1.S1_at--804--5191Chr10:2046799..2046823 (25 bp)
GAATTACCCGTCATGGGATTCGGCG
LOC_Os10g04380
OsAffx.30275.1.S1_at--1104--331Chr10:2046772..2046796 (25 bp)
ATAATAGCGGGCTCCGTAACCATGC
LOC_Os10g04380
OsAffx.30275.1.S1_at--457--1671Chr10:2046713..2046737 (25 bp)
AGCCCCTTATACTGTTATTTCTGCA
LOC_Os10g04380
OsAffx.30275.1.S1_at--308--971Chr10:2046675..2046699 (25 bp)
AGGAGCTTCTGTCAACAACCTCAAC
LOC_Os10g04380
Target Sequence 
TGGAAGCTCGAACCCATTGGATCACCCCCGGTTAGCGATAATAGGGAAGGAAATAGCAAGAACATTGCAGGGGTCACTTG
TCGCCATAAACATATATGCTAATGTTCTGAGGAATAATTTCAGTGTTCCATTTTGGATCCGTGTGCTGAACCTATACAGA
GGGATGATGGAGAGCAACTTGTCCTTGTATGGTGAACACCCTAAATCTCTACTTCAGAAAGATGGAACTATTATAGATAT
AACTGCATTTTGCCCGTCATTGGCTACAAACTCACTTCGAATCACACTGCTAACTGGTGAAAAATTCAAGTATGATAACA
AAAGGGAATTACCCGTCATGGGATTCGGCGATATAATAGCGGGCTCCGTAACCATGCCAATGAAGTTTCAGTTAGTTTGG
GAATCACGGTTAGCCCCTTATACTGTTATTTCTGCAACTTGTGGTGCAGAGGAGCTTCTGTCAACAACCTCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30275.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis