Browse Element(s) Details


Os.46492.1.S1_at

Description gb:AK071096.1
DB_XREF= gi:32981119
TID=Os.46492.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46492 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0013J21.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023080B21, full insert sequence.
FL= gb:AK071096.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0437011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04316OsAffx.25936.3.S1_at11/1110+2019282..2025668retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g04316OsAffx.25936.7.S1_s_at8/1110+2019282..2025668retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g04316OsAffx.25936.5.S1_x_at8/1110+2019282..2025668retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g04316OsAffx.25936.1.S1_s_at7/1110+2019282..2025668retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g04316OsAffx.25936.2.S1_x_at3/1110+2019282..2025668retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g04316OsAffx.25936.1.S1_at1/1110+2019282..2025668retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g04342Os.51966.1.S1_at11/1110+2028190..2041707disease resistance protein RPM1 homolog, putative, expressed
LOC_Os10g04342OsAffx.30274.1.S1_x_at11/1110+2028190..2041707disease resistance protein RPM1 homolog, putative, expressed
LOC_Os10g04342OsAffx.30274.1.S1_at11/1110+2028190..2041707disease resistance protein RPM1 homolog, putative, expressed
LOC_Os10g04342Os.11925.1.S1_at8/1110+2028190..2041707disease resistance protein RPM1 homolog, putative, expressed
LOC_Os10g04342Os.36453.1.S1_at1/1110+2028190..2041707disease resistance protein RPM1 homolog, putative, expressed
LOC_Os10g04370Os.46492.1.S1_at11/1110+2043569..2044965F-box domain containing protein, expressed
LOC_Os10g04380OsAffx.30275.1.S1_at11/1110+2046641..2048152hypothetical protein
LOC_Os10g04390OsAffx.30276.1.S1_at11/1110+2057176..2060535hypothetical protein
LOC_Os10g04400OsAffx.18124.1.S1_at11/1110+2062030..2065228Transferase family protein
LOC_Os10g04400OsAffx.18124.1.S1_x_at11/1110+2062030..2065228Transferase family protein
LOC_Os10g04410OsAffx.18125.1.S1_at10/1110+2069274..2070969hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46492.1.S1_at--176--4231Chr10:2043939..2043963 (25 bp)
CCGCATCTTCCCGTCAGAAATGGAT
LOC_Os10g04370
Os.46492.1.S1_at--493--4971Chr10:2043914..2043938 (25 bp)
GCATCGCTGATTCGTCTACATTGGC
LOC_Os10g04370
Os.46492.1.S1_at--1114--11Chr10:2043895..2043919 (25 bp)
ATTGGCCGCGAAATGTGATTTGGTA
LOC_Os10g04370
Os.46492.1.S1_at--591--8111Chr10:2043866..2043890 (25 bp)
GGACTGAATGACTACCACGACGACA
LOC_Os10g04370
Os.46492.1.S1_at--499--3351Chr10:2043851..2043875 (25 bp)
CACGACGACAACGTACACGAAATTT
LOC_Os10g04370
Os.46492.1.S1_at--1152--1851Chr10:2043825..2043849 (25 bp)
ACGAGATTTTCTCTGGTCCAACAAC
LOC_Os10g04370
Os.46492.1.S1_at--349--2331Chr10:2043798..2043822 (25 bp)
AAAGTTCCTCAAGGTACCAGCACCT
LOC_Os10g04370
Os.46492.1.S1_at--419--1711Chr10:2043783..2043807 (25 bp)
ACCAGCACCTCGAGGTAATTTTTGT
LOC_Os10g04370
Os.46492.1.S1_at--653--10851Chr10:2043759..2043783 (25 bp)
TTGGACCTGAGCAAATCTCAAATAT
LOC_Os10g04370
Os.46492.1.S1_at--363--2031Chr10:2043646..2043670 (25 bp)
TAATTTCGGACCACGGTAAGCAACT
LOC_Os10g04370
Os.46492.1.S1_at--769--7831Chr10:2043632..2043656 (25 bp)
GGTAAGCAACTATCTCGTCCATTTT
LOC_Os10g04370
Target Sequence 
CCGCATCTTCCCGTCAGAAATGGATGCATCGCTGATTCGTCTACATTGGCCGCGAAATGTGATTTGGTATATTGGACTGA
ATGACTACCACGACGACAACGTACACGAAATTTTACGAGATTTTCTCTGGTCCAACAACAAAAAGTTCCTCAAGGTACCA
GCACCTCGAGGTAATTTTTGTTGGACCTGAGCAAATCTCAAATATTTTAGTTGTTACGATTGATAATCTTCTGTTTTATT
TGAAGTTGTGCGGGTAATTGTTCACATGTTGCAGTCAGGGATCGAAATGTCTGTAATTTCGGACCACGGTAAGCAACTAT
CTCGTCCATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46492.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis