Browse Element(s) Details


Os.51966.1.S1_at

Description gb:AK064425.1
DB_XREF= gi:32974443
TID=Os.51966.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51966 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-110-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-110-C05, full insert sequence.
FL= gb:AK064425.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0434211/11disease resistance protein RPM1 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04290Os.46055.1.S1_at11/1110+2003103..2016533transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g04290Os.46055.2.S1_x_at11/1110+2003103..2016533transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g04290Os.10827.1.S1_x_at9/1110+2003103..2016533transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g04290OsAffx.18122.1.S1_x_at1/1110+2003103..2016533transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g04316OsAffx.25936.3.S1_at11/1110+2019282..2025668retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g04316OsAffx.25936.7.S1_s_at8/1110+2019282..2025668retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g04316OsAffx.25936.5.S1_x_at8/1110+2019282..2025668retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g04316OsAffx.25936.1.S1_s_at7/1110+2019282..2025668retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g04316OsAffx.25936.2.S1_x_at3/1110+2019282..2025668retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g04316OsAffx.25936.1.S1_at1/1110+2019282..2025668retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g04342Os.51966.1.S1_at11/1110+2028190..2041707disease resistance protein RPM1 homolog, putative, expressed
LOC_Os10g04342OsAffx.30274.1.S1_x_at11/1110+2028190..2041707disease resistance protein RPM1 homolog, putative, expressed
LOC_Os10g04342OsAffx.30274.1.S1_at11/1110+2028190..2041707disease resistance protein RPM1 homolog, putative, expressed
LOC_Os10g04342Os.11925.1.S1_at8/1110+2028190..2041707disease resistance protein RPM1 homolog, putative, expressed
LOC_Os10g04342Os.36453.1.S1_at1/1110+2028190..2041707disease resistance protein RPM1 homolog, putative, expressed
LOC_Os10g04370Os.46492.1.S1_at11/1110+2043569..2044965F-box domain containing protein, expressed
LOC_Os10g04380OsAffx.30275.1.S1_at11/1110+2046641..2048152hypothetical protein
LOC_Os10g04390OsAffx.30276.1.S1_at11/1110+2057176..2060535hypothetical protein
LOC_Os10g04400OsAffx.18124.1.S1_at11/1110+2062030..2065228Transferase family protein
LOC_Os10g04400OsAffx.18124.1.S1_x_at11/1110+2062030..2065228Transferase family protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51966.1.S1_at--816--3311Chr10:2036800..2036824 (25 bp)
CACATAGTGGCAGGTGAGCGTTCAA
LOC_Os10g04342
Os.51966.1.S1_at--434--5231Chr10:2036825..2036849 (25 bp)
GAATATATTTATGTCACGTGCTTTT
LOC_Os10g04342
Os.51966.1.S1_at--1152--751Chr10:2036835..2036859 (25 bp)
ATGTCACGTGCTTTTTATGGAAATT
LOC_Os10g04342
Os.51966.1.S1_at--990--6931Chr10:2036880..2036904 (25 bp)
GTAGTATGGTGCGTAGCTATATTTT
LOC_Os10g04342
Os.51966.1.S1_at--467--3131Chr10:2036943..2036967 (25 bp)
AATTTTATTCCCTTCGATACCATCT
LOC_Os10g04342
Os.51966.1.S1_at--12--10651Chr10:2036950..2036974 (25 bp)
TTCCCTTCGATACCATCTATCTAAT
LOC_Os10g04342
Os.51966.1.S1_at--137--10351Chr10:2037034..2037058 (25 bp)
TTTATTGCTATTTGGTTGCCATTAA
LOC_Os10g04342
Os.51966.1.S1_at--265--5231Chr10:2037061..2037085 (25 bp)
GAATAGGGTTCTATGACCAAATGAT
LOC_Os10g04342
Os.51966.1.S1_at--331--211Chr10:2037140..2037164 (25 bp)
ATATTTCTTAAAACTCATGGCAAAC
LOC_Os10g04342
Os.51966.1.S1_at--925--6851Chr10:2037267..2037291 (25 bp)
GTTTGATCTAATCCATCACGTACGG
LOC_Os10g04342
Os.51966.1.S1_at--560--571Chr10:2037277..2037301 (25 bp)
ATCCATCACGTACGGACAGGCAAGT
LOC_Os10g04342
Target Sequence 
CACATAGTGGCAGGTGAGCGTTCAAGAATATATTTATGTCACGTGCTTTTTATGGAAATTTGAATGCCATGCAAAATGTA
GTAGTATGGTGCGTAGCTATATTTTTTTTGTCATGTTGAATTTATTAACGCGTTGAATTTATAAATTTTATTCCCTTCGA
TACCATCTATCTAATTTATTTTTGTAAAATGTTTTCAACGATATATATTATTCATTTTCAATTTCTTACAATGTTTTATT
GCTATTTGGTTGCCATTAAAAGAATAGGGTTCTATGACCAAATGATTATTGTCATATATAGCATATAATATGAGCAATAT
TGATCTCAAATTATTGGTTTATATTTCTTAAAACTCATGGCAAACTATCTAATTGTATGTATGTAATGGAGGGAGAATAC
ACATGTATATATTTGAGGAAAGACATGATACATGTAGAAGGGGATGGAAGGTATTTGTGTATTTTTAGTTTGATCTAATC
CATCACGTACGGACAGGCAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51966.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis