Browse Element(s) Details


Os.46055.1.S1_at

Description gb:AK102469.1
DB_XREF= gi:32987678
TID=Os.46055.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46055 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative retrotransposable elements TNP2 (OSJNBb0004A06.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033094G04, full insert sequence.
FL= gb:AK102469.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0429011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04270Os.10358.1.A1_at11/1110+1982985..1983982Jacalin-like lectin domain containing protein, expressed
LOC_Os10g04280Os.23219.2.S1_x_at1/1110+1995147..1996028hypothetical protein
LOC_Os10g04290Os.46055.1.S1_at11/1110+2003103..2016533transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g04290Os.46055.2.S1_x_at11/1110+2003103..2016533transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g04290Os.10827.1.S1_x_at9/1110+2003103..2016533transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g04290OsAffx.18122.1.S1_x_at1/1110+2003103..2016533transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g04316OsAffx.25936.3.S1_at11/1110+2019282..2025668retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g04316OsAffx.25936.7.S1_s_at8/1110+2019282..2025668retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g04316OsAffx.25936.5.S1_x_at8/1110+2019282..2025668retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g04316OsAffx.25936.1.S1_s_at7/1110+2019282..2025668retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g04316OsAffx.25936.2.S1_x_at3/1110+2019282..2025668retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g04316OsAffx.25936.1.S1_at1/1110+2019282..2025668retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g04342Os.51966.1.S1_at11/1110+2028190..2041707disease resistance protein RPM1 homolog, putative, expressed
LOC_Os10g04342OsAffx.30274.1.S1_x_at11/1110+2028190..2041707disease resistance protein RPM1 homolog, putative, expressed
LOC_Os10g04342OsAffx.30274.1.S1_at11/1110+2028190..2041707disease resistance protein RPM1 homolog, putative, expressed
LOC_Os10g04342Os.11925.1.S1_at8/1110+2028190..2041707disease resistance protein RPM1 homolog, putative, expressed
LOC_Os10g04342Os.36453.1.S1_at1/1110+2028190..2041707disease resistance protein RPM1 homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46055.1.S1_at--371--2611Chr10:2010086..2010110 (25 bp)
AACCTGAGCCTACCGGTAATGAGGA
LOC_Os10g04290
Os.46055.1.S1_at--606--7551Chr10:2010149..2010173 (25 bp)
GTGGCCTACCTGAATGGATTTACTT
LOC_Os10g04290
Os.46055.1.S1_at--93--8571Chr10:2010163..2010308 (25 bp)
TGGATTTACTTTCAGTGATCCATGG
LOC_Os10g04290
Os.46055.1.S1_at--101--10431Chr10:2010318..2010342 (25 bp)
TTATCCTAGCTTTGTACGGCCGTCA
LOC_Os10g04290
Os.46055.1.S1_at--412--5511Chr10:2010355..2010379 (25 bp)
GAAAATCGGGTTGCGTCATCGTGCT
LOC_Os10g04290
Os.46055.1.S1_at--357--4651Chr10:2010367..2010391 (25 bp)
GCGTCATCGTGCTTAATTTAATCAG
LOC_Os10g04290
Os.46055.1.S1_at--661--1972Chr10:2010485..2010509 (25 bp)
ACTGACCTTGTGGAGACGCGAGGCA
LOC_Os10g04290
Os.46055.1.S1_at--39--1752Chr10:2010489..2010513 (25 bp)
ACCTTGTGGAGACGCGAGGCACTCT
LOC_Os10g04290
Os.46055.1.S1_at--536--9551Chr10:2010551..2010575 (25 bp)
TCTTTGCGGTCGAAGACACGTCTGT
LOC_Os10g04290
Os.46055.1.S1_at--832--2751Chr10:2010563..2010587 (25 bp)
AAGACACGTCTGTTAGGAATAATCC
LOC_Os10g04290
Os.46055.1.S1_at--249--6611Chr10:2010654..2010678 (25 bp)
GATTGGAGGCTACGTTTACTTTCCT
LOC_Os10g04290
Target Sequence 
AACCTGAGCCTACCGGTAATGAGGACATTATTGACAATGGAAACAATATTTCGGTCAGAAGTAGTGGCCTACCTGAATGG
ATTTACTTTCAGTGATCCATGGTGGCGATCCTTATCCTAGCTTTGTACGGCCGTCATCGTCTTTTTGAGAAAATCGGGTT
GCGTCATCGTGCTTAATTTAATCAGAAGACAGCTTGAAGTGTTTCATCCATCCCGAAGAAGTTTGGTTTTCCCTCCTAAA
GTCACCTGACGCGCGCCTTAGCAGAGTGGTGAGTGGGGACTGACCTTGTGGAGACGCGAGGCACTCTGGCAGCCGGCCGG
TGAGGGCAGCAAGATTTCGCTCACTCTTTGCGGTCGAAGACACGTCTGTTAGGAATAATCCTTGTGTGCTGATTAGTAGT
AGCTATAAATGGTTAGTTGCTGATTTTGTGGGTGGATGTGTCGGTCTGATTGGAGGCTACGTTTACTTTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46055.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis