Browse Element(s) Details


Os.23219.2.S1_x_at

Description gb:NM_191846.1
DB_XREF= gi:34910775
GEN=P0042A10.17
TID=Os.23219.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.23219 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) VsaA -like protein (P0042A10.17), mRNA.
PROD=VsaA -like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5269010/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g042801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52660Os.5920.1.S1_at9/111+30599760..30600925Pollen proteins Ole e I family protein, expressed
LOC_Os01g52670OsAffx.9333.1.S1_at11/111+30603270..30604046expressed protein
LOC_Os01g52680Os.28015.1.S1_at10/111+30605264..30607659SRF-type transcription factor family protein, expressed
LOC_Os01g52690Os.23219.1.S1_at11/111+30620790..30623387retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g52690Os.23219.2.S1_x_at10/111+30620790..30623387retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g52700NANA1+30631199..30632388hypothetical protein
LOC_Os01g52710Os.32160.1.S1_a_at11/111+30638225..30642621Glycosyl transferase family 8 protein, expressed
LOC_Os01g52710Os.32160.2.S1_x_at11/111+30638225..30642621Glycosyl transferase family 8 protein, expressed
LOC_Os01g52710Os.32160.1.S1_at11/111+30638225..30642621Glycosyl transferase family 8 protein, expressed
LOC_Os01g52720Os.24850.1.S1_at11/111+30647596..30650841auxin-induced, putative, expressed
LOC_Os01g52720OsAffx.2318.2.A1_x_at11/111+30647596..30650841auxin-induced, putative, expressed
LOC_Os01g52720Os.24850.1.S1_x_at11/111+30647596..30650841auxin-induced, putative, expressed
LOC_Os01g52720OsAffx.2318.2.A1_at8/111+30647596..30650841auxin-induced, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006350biological_processtranscription
GO:0006468biological_processprotein amino acid phosphorylation
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003899molecular_functionDNA-directed RNA polymerase activity
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23219.2.S1_x_at--465--7532Chr10:1995968..1995992 (25 bp)
GGGCACCGGCGGAGGCTACTACCCT
LOC_Os10g04280
Os.23219.2.S1_x_at--527--3631NONE
CTTCCCGTGCTCATACTGGCTGTCG
NONE
Os.23219.2.S1_x_at--625--1951Chr01:30622725..30622749 (25 bp)
ACTGGCTGTCGCACCCGGGCGTGAT
LOC_Os01g52690
Os.23219.2.S1_x_at--407--4471Chr01:30622755..30622779 (25 bp)
GCCTGTTCGGGTTCTGGTGCCCGAT
LOC_Os01g52690
Os.23219.2.S1_x_at--595--6691Chr01:30622813..30622837 (25 bp)
GTTCGGACACGACCTGACCGTGCCG
LOC_Os01g52690
Os.23219.2.S1_x_at--333--1591Chr01:30622875..30622899 (25 bp)
AGCTCTACCGCGAGGGCACGGCGTC
LOC_Os01g52690
Os.23219.2.S1_x_at--713--6131Chr01:30622886..30622910 (25 bp)
GAGGGCACGGCGTCGCTTCTCAACT
LOC_Os01g52690
Os.23219.2.S1_x_at--39--4911Chr01:30622900..30622924 (25 bp)
GCTTCTCAACTCCATGGTGAACAGC
LOC_Os01g52690
Os.23219.2.S1_x_at--1075--791Chr01:30622913..30622937 (25 bp)
ATGGTGAACAGCAGGTTCCCCTTCA
LOC_Os01g52690
Os.23219.2.S1_x_at--400--1711Chr01:30622937..30622961 (25 bp)
ACCACGCAGCAGGTGAAGGACGCGT
LOC_Os01g52690
Os.23219.2.S1_x_at--474--9671Chr01:30622962..30622986 (25 bp)
TCAGCGCCGCGCTCAGCTCAGGAGG
LOC_Os01g52690
Target Sequence 
GGGCACCGGCGGAGGCTACTACCCTCCCTCCCCTTCCACCGGCGGCTACACGCCGACTCCGGACGTTCCGATCAGCACCC
CGTCGAGCCCCTACTCCCCGCTGGTGCCCACGCCGCCGTCGAGCACCACCCCGATGCCCTTCGACCCCAACACGGCACCC
TTCCCGTGCTCATACTGGCTGTCGCACCCGGGCGTGATATGGGGCCTGTTCGGGTTCTGGTGCCCGATGGCGCGGCTGTT
CGGGCCGACCGCCGCGGCGCCGTTCGGACACGACCTGACCGTGCCGGAGGCGCTGGCGAACACGCGCGCCGACGGCGTGG
GCGAGCTCTACCGCGAGGGCACGGCGTCGCTTCTCAACTCCATGGTGAACAGCAGGTTCCCCTTCACCACGCAGCAGGTG
AAGGACGCGTTCAGCGCCGCGCTCAGCTCAGGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23219.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis