Browse Element(s) Details


Os.23219.1.S1_at

Description gb:AK100192.1
DB_XREF= gi:32985401
TID=Os.23219.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23219 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) VsaA -like protein (P0042A10.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023036E12, full insert sequence.
FL= gb:AK100192.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5269011/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52660Os.5920.1.S1_at9/111+30599760..30600925Pollen proteins Ole e I family protein, expressed
LOC_Os01g52670OsAffx.9333.1.S1_at11/111+30603270..30604046expressed protein
LOC_Os01g52680Os.28015.1.S1_at10/111+30605264..30607659SRF-type transcription factor family protein, expressed
LOC_Os01g52690Os.23219.1.S1_at11/111+30620790..30623387retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g52690Os.23219.2.S1_x_at10/111+30620790..30623387retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g52700NANA1+30631199..30632388hypothetical protein
LOC_Os01g52710Os.32160.1.S1_a_at11/111+30638225..30642621Glycosyl transferase family 8 protein, expressed
LOC_Os01g52710Os.32160.2.S1_x_at11/111+30638225..30642621Glycosyl transferase family 8 protein, expressed
LOC_Os01g52710Os.32160.1.S1_at11/111+30638225..30642621Glycosyl transferase family 8 protein, expressed
LOC_Os01g52720Os.24850.1.S1_at11/111+30647596..30650841auxin-induced, putative, expressed
LOC_Os01g52720OsAffx.2318.2.A1_x_at11/111+30647596..30650841auxin-induced, putative, expressed
LOC_Os01g52720Os.24850.1.S1_x_at11/111+30647596..30650841auxin-induced, putative, expressed
LOC_Os01g52720OsAffx.2318.2.A1_at8/111+30647596..30650841auxin-induced, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23219.1.S1_at--264--1891Chr01:30623040..30623064 (25 bp)
ACGTCATGCGTTAGGCTAGGCGGCC
LOC_Os01g52690
Os.23219.1.S1_at--970--9491Chr01:30623065..30623089 (25 bp)
TCTCGATCCTCTGTACTTGAACGTA
LOC_Os01g52690
Os.23219.1.S1_at--675--2051Chr01:30623079..30623103 (25 bp)
ACTTGAACGTACTCGCCACGTGAGG
LOC_Os01g52690
Os.23219.1.S1_at--1110--4351Chr01:30623094..30623118 (25 bp)
CCACGTGAGGCGGATTCGATGCGAT
LOC_Os01g52690
Os.23219.1.S1_at--597--10631Chr01:30623108..30623132 (25 bp)
TTCGATGCGATGTACACGCGAGCAT
LOC_Os01g52690
Os.23219.1.S1_at--347--4611Chr01:30623125..30623149 (25 bp)
GCGAGCATGCGTGCAGGTTCATGTC
LOC_Os01g52690
Os.23219.1.S1_at--668--6071Chr01:30623163..30623187 (25 bp)
GAGTAATCCGGCGTGTTTGCAACTT
LOC_Os01g52690
Os.23219.1.S1_at--869--6411Chr01:30623200..30623224 (25 bp)
GATCTAGAGCGGATGGCCTCTGGAA
LOC_Os01g52690
Os.23219.1.S1_at--558--9851Chr01:30623244..30623268 (25 bp)
TACGTATGTTTTGTTATCCTTTTAG
LOC_Os01g52690
Os.23219.1.S1_at--613--7011Chr01:30623328..30623352 (25 bp)
GTACTTGTGGCGTTAAGCATCAGAC
LOC_Os01g52690
Os.23219.1.S1_at--125--371Chr01:30623346..30623370 (25 bp)
ATCAGACGTGTTCTAGTATTTCTAG
LOC_Os01g52690
Target Sequence 
ACGTCATGCGTTAGGCTAGGCGGCCTCTCGATCCTCTGTACTTGAACGTACTCGCCACGTGAGGCGGATTCGATGCGATG
TACACGCGAGCATGCGTGCAGGTTCATGTCGGGGTGGGGTTTGGAGTAATCCGGCGTGTTTGCAACTTTGCATTATGTTT
GATCTAGAGCGGATGGCCTCTGGAATAACTATAGGAGAGTTAAGTACGTATGTTTTGTTATCCTTTTAGAGNNCATGGNC
GCACGGAATGACTACAGGAGTGTTCTCTGTGGNCTTTTAATTCAGTATGTACTTGTGGCGTTAAGCATCAGACGTGTTCT
AGTATTTCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23219.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis