Browse Element(s) Details


OsAffx.2318.2.A1_x_at

Description tigr:9629.m05123
TID=OsAffx.2318.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=50315-51862
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5272011/11auxin-induced, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52690Os.23219.1.S1_at11/111+30620790..30623387retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g52690Os.23219.2.S1_x_at10/111+30620790..30623387retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g52700NANA1+30631199..30632388hypothetical protein
LOC_Os01g52710Os.32160.1.S1_a_at11/111+30638225..30642621Glycosyl transferase family 8 protein, expressed
LOC_Os01g52710Os.32160.2.S1_x_at11/111+30638225..30642621Glycosyl transferase family 8 protein, expressed
LOC_Os01g52710Os.32160.1.S1_at11/111+30638225..30642621Glycosyl transferase family 8 protein, expressed
LOC_Os01g52720Os.24850.1.S1_at11/111+30647596..30650841auxin-induced, putative, expressed
LOC_Os01g52720OsAffx.2318.2.A1_x_at11/111+30647596..30650841auxin-induced, putative, expressed
LOC_Os01g52720Os.24850.1.S1_x_at11/111+30647596..30650841auxin-induced, putative, expressed
LOC_Os01g52720OsAffx.2318.2.A1_at8/111+30647596..30650841auxin-induced, putative, expressed
LOC_Os01g52730Os.19385.1.S2_at11/111+30649597..30651931expressed protein
LOC_Os01g52730Os.19385.1.S1_at11/111+30649597..30651931expressed protein
LOC_Os01g52730Os.19385.2.S1_at2/111+30649597..30651931expressed protein
LOC_Os01g52740NANA1+30667159..30668442expressed protein
LOC_Os01g52750Os.20579.1.S1_at11/111+30670927..30675782Subtilisin N-terminal Region family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2318.2.A1_x_at--53--331Chr01:30649514..30649888 (25 bp)
ATACTTCATCAACTGGTCTCTTTTC
LOC_Os01g52720
OsAffx.2318.2.A1_x_at--1126--10371Chr01:30649884..30649908 (25 bp)
TTTTCTGGCAATCTCTCTTTGGATA
LOC_Os01g52720
OsAffx.2318.2.A1_x_at--735--7511Chr01:30650269..30650293 (25 bp)
GTGGCAAGCCTTTGTGTACTTACCC
LOC_Os01g52720
OsAffx.2318.2.A1_x_at--437--7011Chr01:30650284..30650308 (25 bp)
GTACTTACCCCAGGACAGATGGCAA
LOC_Os01g52720
OsAffx.2318.2.A1_x_at--763--2791Chr01:30650383..30650406 (24 bp)
AAGATCCCTCTTGATTCGTATCTAC
LOC_Os01g52720
OsAffx.2318.2.A1_x_at--1025--6231Chr01:30650438..30650462 (25 bp)
GATGGAAATGAACCCTGCTCGTGTT
LOC_Os01g52720
OsAffx.2318.2.A1_x_at--1156--9091Chr01:30650453..30650477 (25 bp)
TGCTCGTGTTGTGGGAATGTCTCTA
LOC_Os01g52720
OsAffx.2318.2.A1_x_at--679--5271Chr01:30650467..30650491 (25 bp)
GAATGTCTCTATCCGTAAATGCTGA
LOC_Os01g52720
OsAffx.2318.2.A1_x_at--1063--2751Chr01:30650511..30650618 (25 bp)
AAGACTGGACCAGGATTTCTCAGGG
LOC_Os01g52720
OsAffx.2318.2.A1_x_at--992--4711Chr01:30650618..30650642 (25 bp)
GCTGGAAATTTCTTACCGGCACTTT
LOC_Os01g52720
OsAffx.2318.2.A1_x_at--193--4651Chr01:30650682..30650706 (25 bp)
GCGTCATGCAGTTTGTATTACTCCT
LOC_Os01g52720
Target Sequence 
ATACTTCATCAACTGGTCTCTTTTCTGGCAATCTCTCTTTGGATATGTCTGAGGGATCAACATGGAAGATAAGGCGTAGT
GGTTTCTGTGGAATGAGATCAAAGAAGTTTAATGGTTTCATTGATCTTGATGCATATGATACTATAGCGATGAAACTCAG
AGGGGATGGAAGATGCTACATATCTACTATATACACAGAGAACTGGGTGAATTCACCTGGACAACAGGAAGATAATTCGT
GGCAAGCCTTTGTGTACTTACCCCAGGACAGATGGCAAATCATGAAGATCCCTCTTGATTCGTATCTACCCACATGGAGA
GGAAATGTGATCGAAGCAAAGATGGAAATGAACCCTGCTCGTGTTGTGGGAATGTCTCTATCCGTAAATGCTGAGGGCGG
TGTACCTGGTGCAAAGACTGGACCAGGATTTCTCAGGGCTGGAAATTTCTTACCGGCACTTTTTCATGTGATAATTGCTG
AATATCACGAGGCATGGAGATGCGTCATGCAGTTTGTATTACTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2318.2.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis