Browse Element(s) Details


Os.20579.1.S1_at

Description gb:AK108195.1
DB_XREF= gi:32993404
TID=Os.20579.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.20579 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) subtilisin-like protease (P0042A10.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-140-C06, full insert sequence.
FL= gb:AK108195.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5275011/11Subtilisin N-terminal Region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52720Os.24850.1.S1_at11/111+30647596..30650841auxin-induced, putative, expressed
LOC_Os01g52720OsAffx.2318.2.A1_x_at11/111+30647596..30650841auxin-induced, putative, expressed
LOC_Os01g52720Os.24850.1.S1_x_at11/111+30647596..30650841auxin-induced, putative, expressed
LOC_Os01g52720OsAffx.2318.2.A1_at8/111+30647596..30650841auxin-induced, putative, expressed
LOC_Os01g52730Os.19385.1.S2_at11/111+30649597..30651931expressed protein
LOC_Os01g52730Os.19385.1.S1_at11/111+30649597..30651931expressed protein
LOC_Os01g52730Os.19385.2.S1_at2/111+30649597..30651931expressed protein
LOC_Os01g52740NANA1+30667159..30668442expressed protein
LOC_Os01g52750Os.20579.1.S1_at11/111+30670927..30675782Subtilisin N-terminal Region family protein, expressed
LOC_Os01g52760OsAffx.2319.1.S1_at11/111+30678677..30685105expressed protein
LOC_Os01g52760Os.33039.1.S1_at10/111+30678677..30685105expressed protein
LOC_Os01g52760Os.54724.1.S1_at3/111+30678677..30685105expressed protein
LOC_Os01g52770Os.28229.2.S1_x_at11/111+30688608..30690943GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g52770Os.28229.1.S1_at5/111+30688608..30690943GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g52770Os.51561.1.S1_x_at1/111+30688608..30690943GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g52780Os.41805.1.S1_at11/111+30689910..30697060TB2/DP1, HVA22 family protein, expressed
LOC_Os01g52780Os.37148.1.S1_at11/111+30689910..30697060TB2/DP1, HVA22 family protein, expressed
LOC_Os01g52790Os.10346.1.S1_at11/111+30699052..30703760Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009733biological_processresponse to auxin stimulus
GO:0010102biological_processlateral root morphogenesis
GO:0004289molecular_functionsubtilase activity
GO:0004291molecular_functionsubtilisin activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20579.1.S1_at--632--5311Chr01:30671321..30671345 (25 bp)
GAAGGTGTCTCCGAGGAGCCTCAGC
LOC_Os01g52750
Os.20579.1.S1_at--413--311Chr01:30671196..30671220 (25 bp)
ATACGTGGAGCGACGGTGTCCATGT
LOC_Os01g52750
Os.20579.1.S1_at--362--8891Chr01:30671169..30671193 (25 bp)
TGAGGAGCCCTCTTGTCGTTCTTGT
LOC_Os01g52750
Os.20579.1.S1_at--147--6731Chr01:30671152..30671176 (25 bp)
GTTCTTGTCGCGTGATTCATTCTTA
LOC_Os01g52750
Os.20579.1.S1_at--867--6591Chr01:30671122..30671146 (25 bp)
GATTGATTACTCTTTACTGCTTAGG
LOC_Os01g52750
Os.20579.1.S1_at--977--9911Chr01:30671108..30671132 (25 bp)
TACTGCTTAGGATGCATTGCTTGAA
LOC_Os01g52750
Os.20579.1.S1_at--194--5591Chr01:30671077..30671101 (25 bp)
GAAATCTAGCCGAAAGCCTGGAAGG
LOC_Os01g52750
Os.20579.1.S1_at--932--2931Chr01:30671056..30671080 (25 bp)
AAGGCTGGAACCATGTTGTGGCAGA
LOC_Os01g52750
Os.20579.1.S1_at--1003--91Chr01:30670993..30671017 (25 bp)
ATTCTTCCCTCTTTGATAGGATCCG
LOC_Os01g52750
Os.20579.1.S1_at--637--7951Chr01:30670975..30670999 (25 bp)
GGATCCGTAGTATACGTTGTGTCGT
LOC_Os01g52750
Os.20579.1.S1_at--425--6631Chr01:30670960..30670984 (25 bp)
GTTGTGTCGTTGTCTGCAAAGTGCA
LOC_Os01g52750
Target Sequence 
GAAGGTGTCTCCGAGGAGCCTCAGCTTCGCGCGCACCGGCGAGAAGAAGTCGTTCAGGATAAAGATCGAGGCCACCAAAG
GGAGAGGCGGTTGGCGTGTAAACGGGCAGTTCGTGGCGGGATCGTATACGTGGAGCGACGGTGTCCATGTTGTGAGGAGC
CCTCTTGTCGTTCTTGTCGCGTGATTCATTCTTAGGTTAGATTGATTACTCTTTACTGCTTAGGATGCATTGCTTGAAAG
AAGTGAAATCTAGCCGAAAGCCTGGAAGGCTGGAACCATGTTGTGGCAGATAAATTCAGCGAAAAGAAAGCGAACACGAC
TTATATATATTCTTCCCTCTTTGATAGGATCCGTAGTATACGTTGTGTCGTTGTCTGCAAAGTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20579.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis