Browse Element(s) Details


Os.54724.1.S1_at

Description gb:AK106601.1
DB_XREF= gi:32991810
TID=Os.54724.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54724 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-112-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-112-B11, full insert sequence.
FL= gb:AK106601.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g527603/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52740NANA1+30667159..30668442expressed protein
LOC_Os01g52750Os.20579.1.S1_at11/111+30670927..30675782Subtilisin N-terminal Region family protein, expressed
LOC_Os01g52760OsAffx.2319.1.S1_at11/111+30678677..30685105expressed protein
LOC_Os01g52760Os.33039.1.S1_at10/111+30678677..30685105expressed protein
LOC_Os01g52760Os.54724.1.S1_at3/111+30678677..30685105expressed protein
LOC_Os01g52770Os.28229.2.S1_x_at11/111+30688608..30690943GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g52770Os.28229.1.S1_at5/111+30688608..30690943GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g52770Os.51561.1.S1_x_at1/111+30688608..30690943GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g52780Os.41805.1.S1_at11/111+30689910..30697060TB2/DP1, HVA22 family protein, expressed
LOC_Os01g52780Os.37148.1.S1_at11/111+30689910..30697060TB2/DP1, HVA22 family protein, expressed
LOC_Os01g52790Os.10346.1.S1_at11/111+30699052..30703760Cytochrome P450 family protein, expressed
LOC_Os01g52800NANA1+30705033..30705832Cytochrome P450 72A1, putative
LOC_Os01g52810Os.38212.1.S1_at6/111+30707676..30710005expressed protein
LOC_Os01g52810Os.52501.1.S1_x_at5/111+30707676..30710005expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54724.1.S1_at--844--5031Chr01:30684380..30684404 (25 bp)
GCAGTTCTAGCATGCTGTACTCCTA
LOC_Os01g52760
Os.54724.1.S1_at--369--7451Chr01:30684422..30684446 (25 bp)
GTGTCACTTTCCCAGTAAGCTGTGC
LOC_Os01g52760
Os.54724.1.S1_at--906--5471Chr01:30684456..30684480 (25 bp)
GAACTAGGCCTTATTTGCGCTTGTA
LOC_Os01g52760
Os.54724.1.S1_at--802--6671Chr01:30685857..30685881 (25 bp)
GTTGCTTCGCTCATCATGCTGATAG
NONE
Os.54724.1.S1_at--681--151Chr01:30685898..30685922 (25 bp)
ATTAGTAGCTACTTCTTGCGTTTCA
NONE
Os.54724.1.S1_at--949--10671Chr01:30685913..30685937 (25 bp)
TTGCGTTTCAAGCTGTCTAGTACAT
NONE
Os.54724.1.S1_at--167--9771Chr01:30686022..30686046 (25 bp)
TAATGCAGCTTGATCCGGCGTTAAA
NONE
Os.54724.1.S1_at--303--1031Chr01:30686090..30686114 (25 bp)
AGGTCGGTCGACATCAGATCTTCAC
NONE
Os.54724.1.S1_at--808--8491Chr01:30686156..30686180 (25 bp)
TGGCTAGTATATTCGATCCCCTTTA
NONE
Os.54724.1.S1_at--410--551Chr01:30686171..30686195 (25 bp)
ATCCCCTTTAGACATGCTATCCAAT
NONE
Os.54724.1.S1_at--36--3291Chr01:30686196..30686220 (25 bp)
CAAACGAAGCCTTGCTACTGTGCGG
NONE
Target Sequence 
GCAGTTCTAGCATGCTGTACTCCTACAATCCTACATTTCCTGGTGTCACTTTCCCAGTAAGCTGTGCCGAATTAATGAAC
TAGGCCTTATTTGCGCTTGTATTTAGGGTCAAGTTGAATTGAGATGCCTTTTATATCTATTTAATAGCCCGGAGGATCCA
AACATGGCCATTGAGGCAAAAAAAAAAAACAAGAAGAAGAAGAAGCAGGAGCAGCAATTATGCGGTTGCTTCGCTCATCA
TGCTGATAGTGTTCATACGCTACTATTAGTAGCTACTTCTTGCGTTTCAAGCTGTCTAGTACATAAATGTTGGTGATTGG
CAATACGATTGGAGGAATTAAGGCAAAAGAGCACCTAACCATGTTATATGTTTCATGCATTTGTTCATTAATGCAGCTTG
ATCCGGCGTTAAAATTGGCTTGATCGGACTGCCGTGGTCTGTCATCATCCCTGAACAGGTCGGTCGACATCAGATCTTCA
CCTATATTGGAGGCTAAGTTGTTCACCAACTCATTGTGTTTATGGCTAGTATATTCGATCCCCTTTAGACATGCTATCCA
ATCAAACGAAGCCTTGCTACTGTGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54724.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis