Browse Element(s) Details


Os.52501.1.S1_x_at

Description gb:AK067554.1
DB_XREF= gi:32977572
TID=Os.52501.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52501 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013108L07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013108L07, full insert sequence.
FL= gb:AK067554.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1257010/11expressed protein
LOC_Os01g528105/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12520Os.50233.1.S1_at11/117+7143853..7148040SWIM zinc finger family protein, putative, expressed
LOC_Os07g12530Os.26832.1.S1_at10/117+7151157..7156206ABC1 family protein, expressed
LOC_Os07g12540OsAffx.16228.1.S1_at11/117+7159169..7160548expressed protein
LOC_Os07g12550OsAffx.29680.1.S1_at8/117+7161453..7163595hypothetical protein
LOC_Os07g12560Os.29745.1.S2_at11/117+7163854..7166029F-box domain containing protein, expressed
LOC_Os07g12560Os.29745.1.S1_at11/117+7163854..7166029F-box domain containing protein, expressed
LOC_Os07g12570Os.52501.1.S1_x_at10/117+7166700..7169696expressed protein
LOC_Os07g12580OsAffx.28419.1.S1_at11/117+7180720..7181108hypothetical protein
LOC_Os07g12590Os.23876.1.S1_at11/117+7182309..7185281F-box domain containing protein, expressed
LOC_Os07g12590OsAffx.16229.1.S1_x_at1/117+7182309..7185281F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52501.1.S1_x_at--413--6731Chr07:7168250..7168274 (25 bp)
GTTCTCTCTGCTATCAATGCTTCTT
LOC_Os07g12570
Os.52501.1.S1_x_at--750--2991NONE
AATGCTTCTTATTTGTTTCAGGTAT
NONE
Os.52501.1.S1_x_at--871--2592Chr01:30709394..30709418 (25 bp)
AACGACTTGGACTTCTATTTCATGG
LOC_Os01g52810
Os.52501.1.S1_x_at--784--1891Chr07:7167116..7167140 (25 bp)
ACGTCATTCAGATCCCACAGTAAGC
LOC_Os07g12570
Os.52501.1.S1_x_at--1024--7052Chr01:30709611..30709668 (25 bp)
GTAAGCTAATTACGCCCAACGATCT
LOC_Os01g52810
Os.52501.1.S1_x_at--623--6411Chr07:7167077..7167101 (25 bp)
GATCTAACACAATTCCTTTCTCAGC
LOC_Os07g12570
Os.52501.1.S1_x_at--997--4831Chr07:7167054..7167078 (25 bp)
GCTAATTATGCACTCTTTTGTCAGG
LOC_Os07g12570
Os.52501.1.S1_x_at--222--2772Chr01:30709712..30709736 (25 bp)
AAGAGCTGCATTCCTGGTTCTGCTG
LOC_Os01g52810
Os.52501.1.S1_x_at--781--9492Chr01:30709751..30709797 (25 bp)
TCTGCCTGATGTTGATGTGCTGTTC
LOC_Os01g52810
Os.52501.1.S1_x_at--991--8833Chr01:30709837..30709861 (25 bp)
TGATACCTTTCTTATTGTTGCCTCC
LOC_Os01g52810
Os.52501.1.S1_x_at--64--4471Chr07:7166907..7166931 (25 bp)
GCCTCCTCTGATGGCGCATTTGAGA
LOC_Os07g12570
Target Sequence 
GTTCTCTCTGCTATCAATGCTTCTTATTTGTTTCAGGTATAAAAACGACTTGGACTTCTATTTCATGGAGTCATGGTTAG
GAATAAGGAATATTCTATGAATATTCCTTATTCCCAAATTTGAGGACTCTAGCATGGACATCCTAGGAGTTCCTACACTG
GATATTAACTACGTCATTCAGATCCCACAGTAAGCTAATTACGCCCAACGATCTAACACAATTCCTTTCTCAGCTAATTA
TGCACTCTTTTGTCAGGAAGAGCTGCATTCCTGGTTCTGCTGTAACCGAGGGTTGATCTGCCTGATGTTGATGTGCTGTT
CAGCTGTTGCTGTTATGAAGTGGGAATCTCTATTACCAAATGATACCTTTCTTATTGTTGCCTCCTCTGATGGCGCATTT
GAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52501.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis