Browse Element(s) Details


OsAffx.28419.1.S1_at

Description tigr:9635.m01237
TID=OsAffx.28419.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1258011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12530Os.26832.1.S1_at10/117+7151157..7156206ABC1 family protein, expressed
LOC_Os07g12540OsAffx.16228.1.S1_at11/117+7159169..7160548expressed protein
LOC_Os07g12550OsAffx.29680.1.S1_at8/117+7161453..7163595hypothetical protein
LOC_Os07g12560Os.29745.1.S2_at11/117+7163854..7166029F-box domain containing protein, expressed
LOC_Os07g12560Os.29745.1.S1_at11/117+7163854..7166029F-box domain containing protein, expressed
LOC_Os07g12570Os.52501.1.S1_x_at10/117+7166700..7169696expressed protein
LOC_Os07g12580OsAffx.28419.1.S1_at11/117+7180720..7181108hypothetical protein
LOC_Os07g12590Os.23876.1.S1_at11/117+7182309..7185281F-box domain containing protein, expressed
LOC_Os07g12590OsAffx.16229.1.S1_x_at1/117+7182309..7185281F-box domain containing protein, expressed
LOC_Os07g12600Os.52957.1.S1_at11/117+7196890..7200216F-box domain containing protein, expressed
LOC_Os07g12600OsAffx.16229.1.S1_x_at7/117+7196890..7200216F-box domain containing protein, expressed
LOC_Os07g12610Os.50765.1.S1_at11/117+7204847..7207841F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28419.1.S1_at--1123--9331Chr07:7180789..7180813 (25 bp)
TCGCGCGTTGCGCAGCGTGGGAGAG
LOC_Os07g12580
OsAffx.28419.1.S1_at--379--6131Chr07:7180811..7180835 (25 bp)
GAGGGAAAGATGCAGCGCCGTGGGA
LOC_Os07g12580
OsAffx.28419.1.S1_at--1134--8851Chr07:7180841..7180933 (25 bp)
TGATGCAAATGCTGCGTAAGCAAAT
LOC_Os07g12580
OsAffx.28419.1.S1_at--310--9031Chr07:7180924..7180945 (22 bp)
TGCGTAAGCAAATCGACTGGAAATA
LOC_Os07g12580
OsAffx.28419.1.S1_at--964--5111Chr07:7180928..7180952 (25 bp)
GCAAATCGACTGGAAATATCGTTGG
LOC_Os07g12580
OsAffx.28419.1.S1_at--1008--10111Chr07:7180944..7180968 (25 bp)
TATCGTTGGACGTTTGATTTTGATC
LOC_Os07g12580
OsAffx.28419.1.S1_at--650--8111Chr07:7180951..7180975 (25 bp)
GGACGTTTGATTTTGATCCAATGGT
LOC_Os07g12580
OsAffx.28419.1.S1_at--889--6851Chr07:7180955..7180979 (25 bp)
GTTTGATTTTGATCCAATGGTTGGA
LOC_Os07g12580
OsAffx.28419.1.S1_at--933--5751Chr07:7180992..7181016 (25 bp)
GACGTGGAAGCACCAAAACTCAGAG
LOC_Os07g12580
OsAffx.28419.1.S1_at--28--8191Chr07:7180997..7181021 (25 bp)
GGAAGCACCAAAACTCAGAGAATTC
LOC_Os07g12580
OsAffx.28419.1.S1_at--651--8831Chr07:7181054..7181078 (25 bp)
TGATAACAATGCTATCTGTGACTAT
LOC_Os07g12580
Target Sequence 
TCGCGCGTTGCGCAGCGTGGGAGAGGGAAAGATGCAGCGCCGTGGGAGGAGGTGATGCAAATGCTGCGTAAGCAAATCGA
CTGGAAATATCGTTGGACGTTTGATTTTGATCCAATGGTTGGAAGAAAAAAAGGTGACGTGGAAGCACCAAAACTCAGAG
AATTCCTATTAGTGGGGATGATTTGTATAGGTATATATGATAACAATGCTATCTGTGACTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28419.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis