Browse Element(s) Details


OsAffx.16228.1.S1_at

Description tigr:9635.m01233
TID=OsAffx.16228.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1254011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12500Os.35344.18.S1_x_at10/117+7129728..7135775transposon protein, putative, Mutator sub-class
LOC_Os07g12500Os.35344.3.S1_x_at9/117+7129728..7135775transposon protein, putative, Mutator sub-class
LOC_Os07g12500OsAffx.22940.5.S1_x_at3/117+7129728..7135775transposon protein, putative, Mutator sub-class
LOC_Os07g12510OsAffx.22431.1.S1_s_at11/117+7137873..7139079AP2 domain containing protein, expressed
LOC_Os07g12520Os.50233.1.S1_at11/117+7143853..7148040SWIM zinc finger family protein, putative, expressed
LOC_Os07g12530Os.26832.1.S1_at10/117+7151157..7156206ABC1 family protein, expressed
LOC_Os07g12540OsAffx.16228.1.S1_at11/117+7159169..7160548expressed protein
LOC_Os07g12550OsAffx.29680.1.S1_at8/117+7161453..7163595hypothetical protein
LOC_Os07g12560Os.29745.1.S2_at11/117+7163854..7166029F-box domain containing protein, expressed
LOC_Os07g12560Os.29745.1.S1_at11/117+7163854..7166029F-box domain containing protein, expressed
LOC_Os07g12570Os.52501.1.S1_x_at10/117+7166700..7169696expressed protein
LOC_Os07g12580OsAffx.28419.1.S1_at11/117+7180720..7181108hypothetical protein
LOC_Os07g12590Os.23876.1.S1_at11/117+7182309..7185281F-box domain containing protein, expressed
LOC_Os07g12590OsAffx.16229.1.S1_x_at1/117+7182309..7185281F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16228.1.S1_at--163--1031Chr07:7160472..7160496 (25 bp)
AGGTCATGTCCCTGGAGTTGTCAAA
LOC_Os07g12540
OsAffx.16228.1.S1_at--83--5031Chr07:7160429..7160453 (25 bp)
GCAGTGTGTTTTCCATTTGCTCAGG
LOC_Os07g12540
OsAffx.16228.1.S1_at--425--1551Chr07:7160379..7160403 (25 bp)
AGCTTGCATTACGTGGAGGCCTCAA
LOC_Os07g12540
OsAffx.16228.1.S1_at--5--9651Chr07:7160243..7160267 (25 bp)
TCAGTGTTTTGTCTACCTGGTTCCA
LOC_Os07g12540
OsAffx.16228.1.S1_at--687--6331Chr07:7159529..7159553 (25 bp)
GATGCTCGTTGTTCTGCAAGTTGCA
LOC_Os07g12540
OsAffx.16228.1.S1_at--1044--2811Chr07:7159512..7159536 (25 bp)
AAGTTGCATCTGTAATCGGCCACAA
LOC_Os07g12540
OsAffx.16228.1.S1_at--525--8411Chr07:7159407..7159431 (25 bp)
GGCCTTCTTGAAGCGACGTTTTGGA
LOC_Os07g12540
OsAffx.16228.1.S1_at--275--10531Chr07:7159361..7159385 (25 bp)
TTCACCATGCATCTTCATCTTGATC
LOC_Os07g12540
OsAffx.16228.1.S1_at--744--10131Chr07:7159318..7159342 (25 bp)
TATGCAAGGAGCTTCTTAGCCTCGC
LOC_Os07g12540
OsAffx.16228.1.S1_at--476--4851Chr07:7159295..7159319 (25 bp)
GCTACCCCTGAGACCGATGTGAAGA
LOC_Os07g12540
OsAffx.16228.1.S1_at--726--711Chr07:7159255..7159279 (25 bp)
ATGATGATGTTCACGCTAGGCCAGC
LOC_Os07g12540
Target Sequence 
AGGTCATGTCCCTGGAGTTGTCAAAAAGAGGGCACGCTTTTGGGCAGTGTGTTTTCCATTTGCTCAGGATGTCCACTGGT
ATAAGAAAGCTGAAGCTTGCATTACGTGGAGGCCTCAAGGACTCTGAGGAGAGGATCAGTGTTTTGTCTACCTGGTTCCA
GGGACACCAGGCAGATGCTCGTTGTTCTGCAAGTTGCATCTGTAATCGGCCACAAGCCTGGAAAACAGAGGACCTCTTCT
TGGATTCTCTCCAGGAAGTGGAAATCAGTGGATTCAGAGGATCAGAGCATGAATTGGCCTTCTTGAAGCGACGTTTTGGA
TGGGCAGCAATTCTGAAGACATTCACCATGCATCTTCATCTTGATCTTACTGTCAGCGATGATTTATGCAAGGAGCTTCT
TAGCCTCGCTACCCCTGAGACCGATGTGAAGATCTACTTCTATCGTGATGATGATGTTCACGCTAGGCCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16228.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis