Browse Element(s) Details


OsAffx.22431.1.S1_s_at

Description gb:NM_186683.1
DB_XREF= gi:34900451
GEN=OSJNBa0066H10.34
TID=OsAffx.22431.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) contains ESTs AU161463(C63329),C74146(E30502)~pathogenesis-related genes transcriotional activator Pti6-like protein (OSJNBa0066H10.34), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1251011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12490Os.20010.1.S1_at9/117+7119023..7124714KH domain-containing protein, putative, expressed
LOC_Os07g12500Os.35344.18.S1_x_at10/117+7129728..7135775transposon protein, putative, Mutator sub-class
LOC_Os07g12500Os.35344.3.S1_x_at9/117+7129728..7135775transposon protein, putative, Mutator sub-class
LOC_Os07g12500OsAffx.22940.5.S1_x_at3/117+7129728..7135775transposon protein, putative, Mutator sub-class
LOC_Os07g12510OsAffx.22431.1.S1_s_at11/117+7137873..7139079AP2 domain containing protein, expressed
LOC_Os07g12520Os.50233.1.S1_at11/117+7143853..7148040SWIM zinc finger family protein, putative, expressed
LOC_Os07g12530Os.26832.1.S1_at10/117+7151157..7156206ABC1 family protein, expressed
LOC_Os07g12540OsAffx.16228.1.S1_at11/117+7159169..7160548expressed protein
LOC_Os07g12550OsAffx.29680.1.S1_at8/117+7161453..7163595hypothetical protein
LOC_Os07g12560Os.29745.1.S2_at11/117+7163854..7166029F-box domain containing protein, expressed
LOC_Os07g12560Os.29745.1.S1_at11/117+7163854..7166029F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22431.1.S1_s_at--783--3911Chr07:7138196..7138220 (25 bp)
CGGCGACATGGATGCCACCAAAAAA
LOC_Os07g12510
OsAffx.22431.1.S1_s_at--274--351Chr07:7138145..7138169 (25 bp)
ATAACACCAACCATCCTAATGTGAA
LOC_Os07g12510
OsAffx.22431.1.S1_s_at--233--2691Chr07:7138120..7138144 (25 bp)
AAGCTTAGTGGATCATTCCTTTTGA
LOC_Os07g12510
OsAffx.22431.1.S1_s_at--434--91Chr07:7138106..7138130 (25 bp)
ATTCCTTTTGATGTGATTCGATGAT
LOC_Os07g12510
OsAffx.22431.1.S1_s_at--502--6411Chr07:7138064..7138088 (25 bp)
GATCTGATGCGATTATCTTCTTTTT
LOC_Os07g12510
OsAffx.22431.1.S1_s_at--238--7031Chr07:7138030..7138054 (25 bp)
GTACATACATATGCTTTGCTTCTCC
LOC_Os07g12510
OsAffx.22431.1.S1_s_at--1102--10711Chr07:7138015..7138039 (25 bp)
TTGCTTCTCCTGCATTAGGATCTTG
LOC_Os07g12510
OsAffx.22431.1.S1_s_at--401--10391Chr07:7137962..7137986 (25 bp)
TTTTCTGTAATATCATCTCGTCTCA
LOC_Os07g12510
OsAffx.22431.1.S1_s_at--725--451Chr07:7137948..7137972 (25 bp)
ATCTCGTCTCATGTAGTTGTGACAT
LOC_Os07g12510
OsAffx.22431.1.S1_s_at--139--5691Chr07:7137928..7137952 (25 bp)
GACATTGTGGTGTTGACATTGTAAC
LOC_Os07g12510
OsAffx.22431.1.S1_s_at--824--5671Chr07:7137914..7137938 (25 bp)
GACATTGTAACGAATCGGTCGATTC
LOC_Os07g12510
Target Sequence 
CGGCGACATGGATGCCACCAAAAAAAAACTAAAAAAAATAAAAAAAAACAAATAACACCAACCATCCTAATGTGAAAAGC
TTAGTGGATCATTCCTTTTGATGTGATTCGATGATGCTGTTAATCTAAATCTGATCTGATGCGATTATCTTCTTTTTTTA
TTTTTTGTACATACATATGCTTTGCTTCTCCTGCATTAGGATCTTGGGAGAAACTCAAAAACTGATCTGTAATATTTTCT
GTAATATCATCTCGTCTCATGTAGTTGTGACATTGTGGTGTTGACATTGTAACGAATCGGTCGATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22431.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis